Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 2.1e-80 302.4 159 100.0
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 2.8e-77 292.0 159 98.1
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 5.8e-46 188.0 145 73.1
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.8e-46 188.0 159 67.3
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 5.8e-38 161.4 145 60.7
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 1.9e-36 156.4 159 56.0
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 3.2e-36 155.6 150 56.7
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 1.2e-35 153.7 159 57.9
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.9e-34 148.7 139 58.3
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.9e-34 148.7 139 58.3
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 6.6e-34 147.9 146 58.9
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 1.1e-33 147.1 152 55.3
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 5.6e-33 144.8 147 55.8
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 7.3e-33 144.4 159 56.0
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.7e-32 141.7 142 54.9
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.1e-31 140.6 152 52.6
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 5.2e-31 138.3 159 54.7
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 6.8e-31 137.9 142 52.1
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 6.8e-31 137.9 142 54.2
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 6.8e-31 137.9 142 54.2
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.2e-30 137.1 142 52.1
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 2.6e-30 136.0 143 56.6
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 2.6e-30 136.0 148 54.1
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 3.4e-30 135.6 159 54.1
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 7.6e-30 134.4 142 52.8
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 9.9e-30 134.0 145 55.2
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 1.3e-29 133.7 147 51.0
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 1.7e-29 133.3 151 50.3
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 2.9e-29 132.5 142 52.1
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.7e-29 132.1 119 62.2
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 8.4e-29 131.0 148 49.3
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 1.1e-28 130.6 142 50.0
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.4e-28 130.2 142 49.3
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.4e-28 130.2 142 49.3
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.4e-28 130.2 148 49.3
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 2.4e-28 129.4 142 50.7
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 2.4e-28 129.4 152 51.3
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 5.4e-28 128.3 142 48.6
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 1.2e-27 127.1 141 50.4
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 1.6e-27 126.7 142 47.9
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 2.7e-27 125.9 159 50.3
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 4.6e-27 125.2 153 49.7
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 7.8e-27 124.4 141 46.1
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.0e-26 124.0 159 49.7
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 1.7e-26 123.2 143 49.0
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 1.7e-26 123.2 159 49.7
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 3.9e-26 122.1 142 51.4
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 8.6e-26 120.9 144 47.2
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 8.6e-26 120.9 123 51.2
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.1e-25 120.6 144 46.5
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.1e-25 120.6 144 46.5
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 1.1e-25 120.6 141 46.8
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 1.5e-25 120.2 138 54.3
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 2.5e-25 119.4 124 55.6
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 2.5e-25 119.4 138 50.7
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 2.5e-25 119.4 142 50.0
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 7.3e-25 117.9 164 43.3
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 9.6e-25 117.5 120 52.5
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 9.6e-25 117.5 143 51.7
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.6e-24 116.7 144 48.6
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 2.1e-24 116.3 143 51.0
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.1e-24 116.3 144 48.6
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.1e-24 116.3 144 49.3
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.8e-24 115.9 97 70.1
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 2.8e-24 115.9 141 45.4
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 2.8e-24 115.9 144 45.8
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 2.8e-24 115.9 144 46.5
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 2.8e-24 115.9 144 46.5
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 4.7e-24 115.2 145 46.2
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 8.1e-24 114.4 145 45.5
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 1.4e-23 113.6 142 48.6
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.0e-23 112.1 137 46.0
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 8.9e-23 110.9 151 47.7
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.2e-22 110.5 120 50.8
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 1.5e-22 110.2 146 46.6
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 2.0e-22 109.8 142 46.5
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.4e-22 109.0 139 44.6
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 1.3e-21 107.1 142 46.5
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 1.7e-21 106.7 137 47.4
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 2.9e-21 105.9 144 47.9
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 2.9e-21 105.9 139 46.0
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 2.9e-21 105.9 153 41.8
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 3.8e-21 105.5 150 47.3
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 8.4e-21 104.4 142 47.2
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 1.1e-20 104.0 138 47.1
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 1.9e-20 103.2 121 50.4
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 1.9e-20 103.2 149 43.6
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 1.9e-20 103.2 133 47.4
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 2.4e-20 102.8 165 43.6
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 3.2e-20 102.4 140 47.1
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 3.2e-20 102.4 141 44.7
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 5.4e-20 101.7 125 47.2
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 9.3e-20 100.9 128 50.0
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 3.5e-19 99.0 144 43.1
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 6.0e-19 98.2 150 44.7
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 7.8e-19 97.8 137 43.1
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 1.7e-18 96.7 149 44.3
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 3.0e-18 95.9 151 44.4
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 3.0e-18 95.9 142 46.5
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 8.7e-18 94.4 145 41.4
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.1e-17 94.0 149 42.3
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.1e-17 94.0 148 43.2
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 1.5e-17 93.6 121 42.1
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 1.5e-17 93.6 146 45.2
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 4.3e-17 92.0 169 40.2
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 7.3e-17 91.3 149 43.6
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 3.6e-16 89.0 160 39.4
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 6.2e-16 88.2 149 40.3
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 1.1e-15 87.4 139 43.2
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 2.4e-15 86.3 145 40.7
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 3.1e-15 85.9 107 51.4
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.0e-15 85.5 109 45.0
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 9.0e-15 84.3 139 41.7
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 9.0e-15 84.3 121 45.5
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.2e-14 84.0 107 50.5
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.2e-14 84.0 106 46.2
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 3.4e-14 82.4 106 45.3
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 3.4e-14 82.4 106 45.3
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 5.8e-14 81.6 142 41.5
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 7.6e-14 81.3 167 34.7
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 9.9e-14 80.9 66 66.7
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 9.9e-14 80.9 112 46.4
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 2.9e-13 79.3 139 40.3
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 2.9e-13 79.3 142 38.7
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 6.4e-13 78.2 143 36.4
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 8.4e-13 77.8 142 40.1
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 1.4e-12 77.0 114 47.4
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 4.2e-12 75.5 143 35.7
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 5.4e-12 75.1 140 35.7
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 7.1e-12 74.7 156 35.9
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 9.3e-12 74.3 143 37.8
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 9.3e-12 74.3 167 34.7
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 1.6e-11 73.6 140 37.1
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.6e-11 73.6 127 39.4
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 3.5e-11 72.4 140 35.0
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 6.0e-11 71.6 140 35.0
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 6.0e-11 71.6 140 35.0
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 7.9e-11 71.2 144 36.1
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 1.0e-10 70.9 140 34.3
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.0e-10 70.9 141 35.5
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.7e-10 70.1 142 35.2
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.7e-10 70.1 147 35.4
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 1.7e-10 70.1 155 37.4
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 3.0e-10 69.3 139 34.5
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 3.0e-10 69.3 150 33.3
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 3.9e-10 68.9 99 46.5
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 5.1e-10 68.6 147 34.0
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 1.5e-09 67.0 141 36.2
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 3.3e-09 65.9 140 35.7
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 4.3e-09 65.5 137 35.8
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 5.6e-09 65.1 140 36.4
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 7.3e-09 64.7 139 33.1
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.3e-08 63.9 136 35.3
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.8e-08 62.0 40 70.0
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 6.2e-08 61.6 149 36.2
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 8.1e-08 61.2 144 32.6
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 1.4e-07 60.5 140 34.3
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.8e-07 60.1 143 34.3
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 2.4e-07 59.7 108 43.5
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 3.1e-07 59.3 137 32.8
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 5.3e-07 58.5 68 50.0
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.3e-07 58.5 142 33.1
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.0e-06 56.6 147 31.3
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.6e-06 56.2 141 33.3
Rhsim06G0031400 Rhododendron simsii HOM05D004108 ORTHO05D338573 9.9e-06 54.3 46 60.9


User provided reference genes

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