Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043490 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 2.5e-95 352.1 170 100.0
CSS0008944 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.2e-57 226.9 174 68.4
CSS0020228 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 5.0e-56 221.5 181 66.3
CSS0037655 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.4e-53 213.4 174 65.5
CSS0046058 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 4.1e-50 201.8 125 81.6
Actinidia03928 Actinidia chinensis HOM05D002156 ORTHO05D002328 4.6e-41 171.8 171 54.4
Hma1.2p1_1039F.1_g250900 Hydrangea macrophylla HOM05D002156 ORTHO05D002328 1.7e-40 169.9 152 55.9
vmacro07661 Vaccinium macrocarpon HOM05D002156 ORTHO05D002328 2.3e-40 169.5 145 62.8
Lj1A1067G36 Lonicera japonica HOM05D002156 ORTHO05D002328 6.6e-40 167.9 165 50.9
CSS0038488 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.5e-39 166.8 181 55.8
Rhsim03G0050200 Rhododendron simsii HOM05D002156 ORTHO05D002328 8.1e-38 161.0 167 53.3
CSS0001756 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 3.1e-37 159.1 174 54.6
Thecc.05G243200 Theobroma cacao HOM05D002156 ORTHO05D002328 3.4e-36 155.6 167 47.9
CiPaw.09G168300 Carya illinoinensis HOM05D002156 ORTHO05D002328 2.2e-35 152.9 158 53.2
COL.COLO4_28629 Corchorus olitorius HOM05D002156 ORTHO05D002328 2.9e-35 152.5 166 48.2
Duzib128G0733 Durio zibethinus HOM05D002156 ORTHO05D002328 6.4e-35 151.4 168 45.8
GSVIVG01025814001 Vitis vinifera HOM05D002156 ORTHO05D002328 1.9e-34 149.8 167 49.1
TAR623G0551 Trochodendron aralioides HOM05D002156 ORTHO05D002328 4.1e-34 148.7 166 47.6
Cfa017704 Carpinus fangiana HOM05D002156 ORTHO05D002328 5.4e-34 148.3 167 47.9
Duzib106G2010 Durio zibethinus HOM05D002156 ORTHO05D002328 5.4e-34 148.3 166 45.2
Ciclev10019878m.g Citrus clementina HOM05D002156 ORTHO05D002328 7.1e-34 147.9 168 50.6
TWI32G0999 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 1.2e-33 147.1 158 51.3
Cpa.g.sc161.28 Carica papaya HOM05D002156 ORTHO05D002328 1.6e-33 146.7 167 45.5
Haze_20432 Corylus avellana HOM05D002156 ORTHO05D002328 2.1e-33 146.4 167 47.3
HanXRQChr11g0348131 Helianthus annuus HOM05D002156 ORTHO05D002328 2.1e-33 146.4 165 46.7
Atru.chr2.1496 Acer truncatum HOM05D002156 ORTHO05D002328 6.0e-33 144.8 128 57.0
MD12G1009700 Malus domestica HOM05D002156 ORTHO05D002328 7.8e-33 144.4 162 47.5
MD12G1009900 Malus domestica HOM05D002156 ORTHO05D002328 7.8e-33 144.4 147 50.3
MD14G1007100 Malus domestica HOM05D002156 ORTHO05D002328 7.8e-33 144.4 167 46.1
ECA248G3031 Erigeron canadensis HOM05D002156 ORTHO05D002328 1.0e-32 144.1 161 47.2
TWI34G0345 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 1.0e-32 144.1 127 56.7
Sabra13G0056700 Salix brachista HOM05D002156 ORTHO05D002328 1.3e-32 143.7 165 44.8
arahy.Tifrunner.gnm1.ann1.7VP81J Arachis hypogaea HOM05D002156 ORTHO05D002328 1.7e-32 143.3 167 43.1
arahy.Tifrunner.gnm1.ann1.M0VUV2 Arachis hypogaea HOM05D002156 ORTHO05D002328 1.7e-32 143.3 167 43.1
Prupe.7G011900 Prunus persica HOM05D002156 ORTHO05D002328 1.7e-32 143.3 165 45.5
RcHm_v2.0_Chr3g0496221 Rosa chinensis HOM05D002156 ORTHO05D002328 1.7e-32 143.3 167 44.9
Gohir.D11G241900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 2.3e-32 142.9 167 44.9
Gorai.007G256200 Gossypium raimondii HOM05D002156 ORTHO05D002328 2.3e-32 142.9 167 44.9
Potri.019G039300 Populus trichocarpa HOM05D002156 ORTHO05D002328 3.9e-32 142.1 165 46.1
Lalb_Chr14g0364791 Lupinus albus HOM05D002156 ORTHO05D002328 8.6e-32 141.0 167 42.5
Gohir.A13G163900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.1e-31 140.6 173 45.1
MD09G1231100 Malus domestica HOM05D002156 ORTHO05D002328 1.1e-31 140.6 147 50.3
Potri.013G064800 Populus trichocarpa HOM05D002156 ORTHO05D002328 1.5e-31 140.2 165 44.8
Gorai.013G195700 Gossypium raimondii HOM05D002156 ORTHO05D002328 1.9e-31 139.8 167 44.3
Lj1g0011130 Lotus japonicus HOM05D002156 ORTHO05D002328 1.9e-31 139.8 165 42.4
Aqoxy1G00521 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 2.5e-31 139.4 146 48.6
Cc06_g17240 Coffea canephora HOM05D002156 ORTHO05D002328 2.5e-31 139.4 161 45.3
Gohir.A11G230100 Gossypium hirsutum HOM05D002156 ORTHO05D002328 2.5e-31 139.4 167 43.7
Gohir.D13G166800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 3.3e-31 139.0 167 44.3
PGR042G0405 Punica granatum HOM05D002156 ORTHO05D002328 4.3e-31 138.7 160 46.9
Lsat_1_v5_gn_1_55260 Lactuca sativa HOM05D002156 ORTHO05D002328 7.3e-31 137.9 169 45.0
QL07p017931 Quercus lobata HOM05D002156 ORTHO05D002328 7.3e-31 137.9 167 46.1
Ca_08306_v3 Cicer arietinum L. HOM05D002156 ORTHO05D002328 9.5e-31 137.5 167 44.3
Manes.08G153900 Manihot esculenta HOM05D002156 ORTHO05D002328 2.8e-30 136.0 167 44.9
EL10Ac5g11718 Beta vulgaris HOM05D002156 ORTHO05D002328 6.2e-30 134.8 160 45.6
Nn2g14545 Nelumbo nucifera HOM05D002156 ORTHO05D002328 8.1e-30 134.4 167 46.1
PSO384G2429 Papaver somniferum HOM05D002156 ORTHO05D002328 1.1e-29 134.0 165 43.6
Sc07g0007830 Simmondsia chinensis HOM05D002156 ORTHO05D002328 4.0e-29 132.1 158 44.3
DCAR_020655 Daucus carota HOM05D002156 ORTHO05D002328 5.2e-29 131.7 167 43.7
Lsat_1_v5_gn_2_103620 Lactuca sativa HOM05D002156 ORTHO05D002328 6.8e-29 131.3 165 42.4
Glyma.19G116100 Glycine max HOM05D002156 ORTHO05D002328 8.9e-29 131.0 167 43.1
FvH4_1g28540 Fragaria vesca HOM05D002156 ORTHO05D002328 1.2e-28 130.6 165 41.2
Psat3g087320 Pisum sativum HOM05D002156 ORTHO05D002328 1.5e-28 130.2 166 43.4
Eucgr.A02134 Eucalyptus grandis HOM05D002156 ORTHO05D002328 2.0e-28 129.8 165 43.0
FAN19G2483 Fragaria x ananassa HOM05D002156 ORTHO05D002328 2.0e-28 129.8 165 41.2
Medtr7g086460 Medicago truncatula HOM05D002156 ORTHO05D002328 2.0e-28 129.8 165 42.4
Hund22589 Selenicereus undatus HOM05D002156 ORTHO05D002328 4.4e-28 128.6 165 44.8
AUR62036257 Chenopodium quinoa HOM05D002156 ORTHO05D002328 9.9e-28 127.5 165 43.0
HanXRQChr01g0026721 Helianthus annuus HOM05D002156 ORTHO05D029280 1.3e-27 127.1 130 48.5
FAN23G2882 Fragaria x ananassa HOM05D002156 ORTHO05D002328 1.7e-27 126.7 165 41.2
Glyma.16G037000 Glycine max HOM05D002156 ORTHO05D002328 1.7e-27 126.7 167 40.7
VMungo1383G3546 Vigna mungo HOM05D002156 ORTHO05D002328 1.7e-27 126.7 167 41.9
THA.LOC104821409 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 2.2e-27 126.3 163 41.7
THA.LOC104800077 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 3.8e-27 125.6 163 41.7
THA.LOC104800404 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 3.8e-27 125.6 163 41.7
CsaV3_4G011990 Cucumis sativus L. HOM05D002156 ORTHO05D002328 4.9e-27 125.2 161 43.5
Nitab4.5_0001720g0020 Nicotiana tabacum HOM05D002156 ORTHO05D002328 1.9e-26 123.2 161 42.9
MELO3C008849.2 Cucumis melo HOM05D002156 ORTHO05D002328 2.4e-26 122.9 161 42.9
ClCG04G004550 Citrullus lanatus HOM05D002156 ORTHO05D002328 5.4e-26 121.7 161 42.9
AUR62038448 Chenopodium quinoa HOM05D002156 ORTHO05D002328 9.2e-26 120.9 167 41.9
Peaxi162Scf01344g00018 Petunia axillaris HOM05D002156 ORTHO05D002328 9.2e-26 120.9 165 41.2
CDE05G3656 Ceratophyllum demersum HOM05D002156 ORTHO05D002328 1.6e-25 120.2 144 41.7
Solyc01g057090.4 Solanum lycopersicum HOM05D002156 ORTHO05D002328 2.1e-25 119.8 161 40.4
Sopen01g021430 Solanum pennellii HOM05D002156 ORTHO05D002328 2.1e-25 119.8 161 40.4
Nitab4.5_0000098g0160 Nicotiana tabacum HOM05D002156 ORTHO05D002328 1.3e-24 117.1 161 40.4
HanXRQChr07g0197191 Helianthus annuus HOM05D002156 ORTHO05D002328 3.9e-24 115.5 166 36.1
CAN.G752.1 Capsicum annuum HOM05D002156 ORTHO05D002328 6.6e-24 114.8 164 39.0
Sed0005796 Sechium edule HOM05D002156 ORTHO05D002328 6.6e-24 114.8 161 41.0
SGA_v2.0_scaffold17G07976 Striga asiatica HOM05D002156 ORTHO05D002328 6.6e-24 114.8 160 40.0
ECA232G4690 Erigeron canadensis HOM05D000927 ORTHO05D029280 8.6e-24 114.4 147 38.8
PGSC0003DMG400013066 Solanum tuberosum HOM05D002156 ORTHO05D002328 8.6e-24 114.4 165 38.8
Aa31LG2G1840 Aethionema arabicum HOM05D002156 ORTHO05D002328 1.9e-23 113.2 162 39.5
SalBow1G7226 Salvia bowleyana HOM05D002156 ORTHO05D002328 1.9e-23 113.2 159 40.3
ECA232G3899 Erigeron canadensis HOM05D002156 ORTHO05D029280 2.5e-23 112.8 147 38.1
BcaB03g15489 Brassica carinata HOM05D002156 ORTHO05D002328 3.3e-23 112.5 125 43.2
Oeu032944.1 Olea europaea HOM05D002156 ORTHO05D002328 4.3e-23 112.1 169 42.0
Phvul.001G115500 Phaseolus vulgaris HOM05D002156 ORTHO05D002328 4.3e-23 112.1 158 38.0
Thhalv10018456m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 7.3e-23 111.3 125 41.6
Aqoxy2G00573 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 9.6e-23 110.9 176 38.6
Sed0023631 Sechium edule HOM05D002156 ORTHO05D002328 1.6e-22 110.2 167 38.9
MSTRG.10750 Avicennia marina HOM05D002156 ORTHO05D002328 2.1e-22 109.8 126 46.0
arahy.Tifrunner.gnm1.ann1.0R4MPN Arachis hypogaea HOM05D002156 ORTHO05D002328 3.6e-22 109.0 129 37.2
arahy.Tifrunner.gnm1.ann1.A9N3QV Arachis hypogaea HOM05D002156 ORTHO05D002328 3.6e-22 109.0 153 35.3
Os03g0654500 Oryza sativa ssp. japonica HOM05D002156 ORTHO05D002328 3.6e-22 109.0 166 36.1
Zm00001eb052850 Zea mays HOM05D002156 ORTHO05D002328 3.6e-22 109.0 135 40.7
Oeu056497.3 Olea europaea HOM05D002156 ORTHO05D002328 4.7e-22 108.6 169 40.8
arahy.Tifrunner.gnm1.ann1.4I7PBY Arachis hypogaea HOM05D002156 ORTHO05D002328 1.1e-21 107.5 154 35.1
Sp5g24790 Schrenkiella parvula HOM05D002156 ORTHO05D002328 1.8e-21 106.7 125 42.4
unitig_0.g2673 Utricularia gibba HOM05D002156 ORTHO05D002328 2.4e-21 106.3 160 39.4
ATR0618G027 Amborella trichopoda HOM05D002156 ORTHO05D002328 3.1e-21 105.9 174 36.2
A07p31440 Brassica napus HOM05D002156 ORTHO05D002328 6.9e-21 104.8 125 41.6
BraA07t30779Z Brassica rapa HOM05D002156 ORTHO05D002328 6.9e-21 104.8 125 41.6
C06p36730 Brassica napus HOM05D002156 ORTHO05D002328 1.2e-20 104.0 125 40.8
BolC6t38783H Brassica oleracea HOM05D002156 ORTHO05D002328 1.2e-20 104.0 125 41.6
Migut.K00223 Erythranthe guttata HOM05D002156 ORTHO05D002328 2.0e-20 103.2 125 40.8
BcaC08g45876 Brassica carinata HOM05D002156 ORTHO05D002328 3.4e-20 102.4 125 41.6
HanXRQChr01g0026731 Helianthus annuus HOM05D002156 ORTHO05D029280 4.4e-20 102.1 118 42.4
arahy.Tifrunner.gnm1.ann1.ZF4CS3 Arachis hypogaea HOM05D002156 ORTHO05D002328 9.9e-20 100.9 154 34.4
HPP92_012146 Vanilla planifolia HOM05D002156 ORTHO05D002328 1.3e-19 100.5 166 34.3
CARHR028160 Cardamine hirsuta HOM05D002156 ORTHO05D002328 5.4e-18 95.1 128 40.6
TPR.G17860 Trifolium pratense HOM05D002156 ORTHO05D002328 1.6e-17 93.6 97 47.4
Atru.chr8.2310 Acer truncatum HOM05D002156 ORTHO05D002328 3.5e-17 92.4 88 53.4
AL1G42570 Arabidopsis lyrata HOM05D002156 ORTHO05D002328 6.0e-17 91.7 154 36.4
Dinv25407 Davidia involucrata HOM05D002156 ORTHO05D002328 8.7e-16 87.8 93 47.3
Carub.0001s2716 Capsella rubella HOM05D002156 ORTHO05D002328 1.1e-15 87.4 128 38.3
AT1G28760 Arabidopsis thaliana HOM05D002156 ORTHO05D002328 2.1e-14 83.2 127 37.8
SEGI_38521 Sequoiadendron giganteum HOM05D002156 ORTHO05D002328 2.9e-11 72.8 84 36.9
SEGI_22161 Sequoiadendron giganteum HOM05D002156 ORTHO05D002328 2.4e-10 69.7 115 35.7
PSO541G2762 Papaver somniferum HOM05D002156 ORTHO05D002328 3.9e-08 62.4 118 30.5
Lj7A108T18 Lonicera japonica HOM05D002156 ORTHO05D002328 1.9e-07 60.1 118 27.1
PSO675G2996 Papaver somniferum HOM05D002156 ORTHO05D002328 1.9e-07 60.1 118 28.8
Ciclev10025460m.g Citrus clementina HOM05D002156 ORTHO05D002328 7.4e-07 58.2 116 26.7
SGA_v2.0_scaffold15G07468 Striga asiatica HOM05D002156 ORTHO05D002328 9.6e-07 57.8 103 30.1
Thhalv10010344m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 1.3e-06 57.4 117 25.6
Potri.007G005500 Populus trichocarpa HOM05D002156 ORTHO05D002328 1.6e-06 57.0 126 26.2
Actinidia34534 Actinidia chinensis HOM05D002156 ORTHO05D002328 2.8e-06 56.2 116 25.9
Manes.12G115600 Manihot esculenta HOM05D002156 ORTHO05D002328 3.7e-06 55.8 116 22.4
PGR102G2375 Punica granatum HOM05D002156 ORTHO05D002328 4.8e-06 55.5 63 31.7
SalBow3G0792 Salvia bowleyana HOM05D002156 ORTHO05D002328 4.8e-06 55.5 91 26.4
unitig_60.g25524 Utricularia gibba HOM05D002156 ORTHO05D002328 4.8e-06 55.5 60 30.0
Eucgr.H02313 Eucalyptus grandis HOM05D002156 ORTHO05D002328 6.2e-06 55.1 101 23.8
Migut.H00340 Erythranthe guttata HOM05D002156 ORTHO05D002328 8.1e-06 54.7 98 27.6


User provided reference genes

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