Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043478 Camellia sinensis var. sinensis HOM05D023300 ORTHO05D028398 1.4e-130 469.5 217 100.0
CSS0009100 Camellia sinensis var. sinensis HOM05D023300 ORTHO05D000006 2.0e-105 386.0 328 62.5
CSS0028143 Camellia sinensis var. sinensis HOM05D023300 ORTHO05D028398 7.0e-95 350.9 237 74.7
CSS0024541 Camellia sinensis var. sinensis HOM05D023300 ORTHO05D028398 5.2e-82 308.1 225 69.8
CSS0031047 Camellia sinensis var. sinensis HOM05D023300 ORTHO05D028398 2.0e-65 253.1 222 62.2
vmacro22917 Vaccinium macrocarpon HOM05D006909 ORTHO05D008682 3.1e-26 122.9 179 39.1
vmacro07323 Vaccinium macrocarpon HOM05D000114 ORTHO05D008682 2.0e-25 120.2 179 39.1
Rhsim03G0125100 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.3e-24 117.5 247 29.1
Rhsim08G0012400 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.3e-24 117.5 247 29.1
Rhsim02G0226500 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.7e-17 91.7 206 29.6
CSS0038537 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.4e-13 80.9 89 43.8
CSS0000140 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 8.8e-13 78.2 88 39.8
Rhsim03G0083500 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.2e-11 73.6 271 24.7
Rhsim09G0064700 Rhododendron simsii HOM05D000003 ORTHO05D000004 6.3e-11 72.0 231 22.9
RhsimUnG0081000 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.1e-10 71.2 156 26.9
vmacro07385 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 1.8e-10 70.5 156 26.9
QL03p010778 Quercus lobata HOM05D000003 ORTHO05D000006 3.1e-10 69.7 108 34.3
Rhsim09G0083100 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-09 67.8 170 25.3
COL.COLO4_20949 Corchorus olitorius HOM05D000003 ORTHO05D000006 2.0e-09 67.0 87 35.6
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 2.0e-09 67.0 113 34.5
Rhsim02G0238600 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.0e-09 67.0 270 21.9
COL.COLO4_28312 Corchorus olitorius HOM05D000003 ORTHO05D000006 3.4e-09 66.2 87 35.6
TAR346G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000006 3.4e-09 66.2 86 37.2
COL.COLO4_19177 Corchorus olitorius HOM05D000003 ORTHO05D000006 4.5e-09 65.9 86 33.7
COL.COLO4_22209 Corchorus olitorius HOM05D000003 ORTHO05D000006 5.9e-09 65.5 87 34.5
CANSAT35G0171 Cannabis sativa HOM05D000003 ORTHO05D000004 7.7e-09 65.1 174 23.0
Rhsim07G0114000 Rhododendron simsii HOM05D000003 ORTHO05D000006 7.7e-09 65.1 183 25.7
COL.COLO4_37391 Corchorus olitorius HOM05D000003 ORTHO05D000006 1.0e-08 64.7 88 34.1
Rhsim04G0242400 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.3e-08 64.3 183 24.0
Rhsim08G0107000 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.3e-08 64.3 177 26.6
TAR536G0010 Trochodendron aralioides HOM05D000003 ORTHO05D000006 1.3e-08 64.3 73 37.0
Rhsim01G0110800 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.7e-08 63.9 160 26.9
COL.COLO4_38120 Corchorus olitorius HOM05D000003 ORTHO05D000006 2.2e-08 63.5 86 34.9
Rhsim05G0074900 Rhododendron simsii HOM05D000542 ORTHO05D000202 2.2e-08 63.5 177 26.0
Rhsim12G0080100 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.2e-08 63.5 177 26.0
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 2.9e-08 63.2 86 32.6
Rhsim03G0080700 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.8e-08 62.8 183 23.5
Sc01g0005390 Simmondsia chinensis HOM05D000003 ORTHO05D000006 3.8e-08 62.8 102 32.4
COL.COLO4_21456 Corchorus olitorius HOM05D000003 ORTHO05D000006 5.0e-08 62.4 86 36.0
COL.COLO4_24157 Corchorus olitorius HOM05D007567 ORTHO05D000126 5.0e-08 62.4 86 36.0
Rhsim02G0217100 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.0e-08 62.4 185 24.9
Rhsim02G0134700 Rhododendron simsii HOM05D000003 ORTHO05D000006 8.5e-08 61.6 223 22.0
COL.COLO4_03297 Corchorus olitorius HOM05D007567 ORTHO05D000126 1.1e-07 61.2 86 33.7
Rhsim08G0119400 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-07 60.8 133 24.1
CANSAT80G0559 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-07 60.5 87 32.2
COL.COLO4_19781 Corchorus olitorius HOM05D000003 ORTHO05D000006 1.9e-07 60.5 87 32.2
COL.COLO4_07368 Corchorus olitorius HOM05D000003 ORTHO05D000022 2.5e-07 60.1 110 32.7
PSO302G0175 Papaver somniferum HOM05D000003 ORTHO05D000006 2.5e-07 60.1 137 29.9
Rhsim03G0167500 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.5e-07 60.1 207 24.6
Nn6g31586 Nelumbo nucifera HOM05D000003 ORTHO05D000004 3.2e-07 59.7 99 34.3
Rhsim05G0162800 Rhododendron simsii HOM05D001637 ORTHO05D000006 3.2e-07 59.7 207 24.2
Rhsim09G0070000 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.2e-07 59.7 182 23.1
Cpa.g.sc263.17 Carica papaya HOM05D000003 ORTHO05D000006 4.2e-07 59.3 184 25.5
vmacro08045 Vaccinium macrocarpon HOM05D002944 ORTHO05D003377 4.2e-07 59.3 103 30.1
Manes.02G206350 Manihot esculenta HOM05D000003 ORTHO05D000006 5.5e-07 58.9 90 36.7
COL.COLO4_24628 Corchorus olitorius HOM05D007567 ORTHO05D000006 7.2e-07 58.5 86 30.2
QL05p068740 Quercus lobata HOM05D000003 ORTHO05D000004 9.4e-07 58.2 90 34.4
QL05p069113 Quercus lobata HOM05D000003 ORTHO05D000004 9.4e-07 58.2 90 34.4
PSO782G2043 Papaver somniferum HOM05D000003 ORTHO05D000006 1.2e-06 57.8 87 32.2
Rhsim08G0012100 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-06 57.8 198 24.2
RcHm_v2.0_Chr2g0136131 Rosa chinensis HOM05D000003 ORTHO05D000006 1.2e-06 57.8 106 29.2
QL01p020452 Quercus lobata HOM05D000003 ORTHO05D000006 1.6e-06 57.4 131 26.7
QL07p031105 Quercus lobata HOM05D000003 ORTHO05D000006 1.6e-06 57.4 90 36.7
Rhsim01G0140300 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-06 57.4 202 24.3
Rhsim09G0068100 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.6e-06 57.4 191 24.6
CANSAT56G2134 Cannabis sativa HOM05D000003 ORTHO05D000006 2.1e-06 57.0 87 32.2
COL.COLO4_00029 Corchorus olitorius HOM05D000003 ORTHO05D000006 2.1e-06 57.0 88 30.7
COL.COLO4_15184 Corchorus olitorius HOM05D000003 ORTHO05D000006 2.1e-06 57.0 122 27.9
PSO356G0060 Papaver somniferum HOM05D000003 ORTHO05D000004 2.7e-06 56.6 86 31.4
PSO832G1564 Papaver somniferum HOM05D000003 ORTHO05D000006 2.7e-06 56.6 150 26.7
Rhsim02G0107700 Rhododendron simsii HOM05D000048 ORTHO05D000006 2.7e-06 56.6 170 25.3
Rhsim07G0213000 Rhododendron simsii HOM05D000003 ORTHO05D008945 2.7e-06 56.6 184 23.9
BcaB05g24449 Brassica carinata HOM05D000003 ORTHO05D000411 3.6e-06 56.2 116 30.2
CANSAT80G2739 Cannabis sativa HOM05D000003 ORTHO05D000006 3.6e-06 56.2 86 31.4
FvH4_2g11611 Fragaria vesca HOM05D000003 ORTHO05D000006 3.6e-06 56.2 191 24.1
MBI14_g30949_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 3.6e-06 56.2 95 28.4
PSO063G7593 Papaver somniferum HOM05D000003 ORTHO05D000004 3.6e-06 56.2 87 32.2
Rhsim02G0152800 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.6e-06 56.2 86 30.2
Rhsim04G0053300 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.7e-06 55.8 114 29.8
Hund15109 Selenicereus undatus HOM05D008000 ORTHO05D010275 4.7e-06 55.8 122 28.7
AUR62008646 Chenopodium quinoa HOM05D000003 ORTHO05D000006 6.1e-06 55.5 179 22.3
COL.COLO4_04259 Corchorus olitorius HOM05D007567 ORTHO05D000126 6.1e-06 55.5 69 36.2
Rhsim01G0175200 Rhododendron simsii HOM05D000003 ORTHO05D000006 6.1e-06 55.5 138 24.6
Aqoxy7G02362 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 7.9e-06 55.1 86 29.1
CANSAT56G1417 Cannabis sativa HOM05D000003 ORTHO05D000004 7.9e-06 55.1 91 29.7
QL02p003261 Quercus lobata HOM05D000232 ORTHO05D000126 7.9e-06 55.1 100 27.0
Rhsim04G0150700 Rhododendron simsii HOM05D000003 ORTHO05D000126 7.9e-06 55.1 126 26.2


User provided reference genes

Program Settings