Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043472 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.6e-97 359.8 225 100.0
Dinv14972 Davidia involucrata HOM05D002316 ORTHO05D002280 5.8e-60 235.0 217 62.2
vmacro17430 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 1.1e-55 220.7 213 61.0
GSVIVG01014224001 Vitis vinifera HOM05D002316 ORTHO05D002280 3.1e-53 212.6 232 57.3
vmacro11915 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 5.8e-52 208.4 219 64.8
Rhsim06G0205700 Rhododendron simsii HOM05D002316 ORTHO05D002280 1.6e-49 200.3 213 54.9
Sopen12g006010 Solanum pennellii HOM05D002316 ORTHO05D002280 2.4e-45 186.4 220 54.1
Solyc12g014220.3 Solanum lycopersicum HOM05D002316 ORTHO05D002280 1.5e-44 183.7 220 55.9
TAR624G0302 Trochodendron aralioides HOM05D002316 ORTHO05D002280 1.5e-44 183.7 222 59.9
ECA234G4357 Erigeron canadensis HOM05D002316 ORTHO05D002280 4.5e-44 182.2 215 53.0
PGSC0003DMG400015334 Solanum tuberosum HOM05D002316 ORTHO05D002280 6.5e-43 178.3 226 56.2
CAN.G292.5 Capsicum annuum HOM05D002316 ORTHO05D002280 1.9e-42 176.8 226 50.0
HanXRQChr12g0373471 Helianthus annuus HOM05D002316 ORTHO05D002280 3.5e-41 172.6 205 59.5
Manes.02G100500 Manihot esculenta HOM05D002316 ORTHO05D002280 3.5e-41 172.6 222 55.9
Nn1g09090 Nelumbo nucifera HOM05D002316 ORTHO05D002280 1.0e-40 171.0 221 49.8
DCAR_017163 Daucus carota HOM05D002316 ORTHO05D002280 1.3e-40 170.6 225 49.3
Peaxi162Scf00934g00148 Petunia axillaris HOM05D002316 ORTHO05D002280 1.9e-39 166.8 226 51.3
Cpa.g.sc131.59 Carica papaya HOM05D002316 ORTHO05D002280 5.7e-39 165.2 202 50.5
Nitab4.5_0000035g0100 Nicotiana tabacum HOM05D002316 ORTHO05D002280 2.1e-38 163.3 242 47.9
Oeu051116.1 Olea europaea HOM05D002316 ORTHO05D002280 6.3e-38 161.8 203 45.3
MSTRG.14222 Avicennia marina HOM05D002316 ORTHO05D002280 8.2e-38 161.4 205 47.3
Nitab4.5_0005440g0080 Nicotiana tabacum HOM05D002316 ORTHO05D002280 8.2e-38 161.4 216 50.5
Migut.H01980 Erythranthe guttata HOM05D002316 ORTHO05D002280 1.8e-37 160.2 205 48.3
Eucgr.F03256 Eucalyptus grandis HOM05D002316 ORTHO05D002280 5.3e-37 158.7 231 49.8
Gohir.D13G153100 Gossypium hirsutum HOM05D002316 ORTHO05D002280 5.3e-37 158.7 221 44.3
Gorai.013G173000 Gossypium raimondii HOM05D002316 ORTHO05D002280 5.3e-37 158.7 221 44.3
Oeu061346.1 Olea europaea HOM05D002316 ORTHO05D002280 9.0e-37 157.9 214 53.7
Actinidia12558 Actinidia chinensis HOM05D002316 ORTHO05D002280 1.5e-36 157.1 218 55.5
Duzib213G0315 Durio zibethinus HOM05D002316 ORTHO05D002280 3.4e-36 156.0 223 55.2
Gohir.A13G148550 Gossypium hirsutum HOM05D002316 ORTHO05D002280 3.4e-36 156.0 220 48.6
Potri.011G112300 Populus trichocarpa HOM05D002316 ORTHO05D002280 5.0e-35 152.1 223 55.2
Haze_09346 Corylus avellana HOM05D002316 ORTHO05D002280 1.9e-34 150.2 271 42.1
FAN21G3617 Fragaria x ananassa HOM05D002316 ORTHO05D002280 5.5e-34 148.7 214 46.3
Ciclev10008352m.g Citrus clementina HOM05D002316 ORTHO05D002280 2.7e-33 146.4 211 55.9
MBI06_g25991_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 1.0e-32 144.4 231 46.3
QL08p026808 Quercus lobata HOM05D002316 ORTHO05D002280 3.9e-32 142.5 280 41.4
Atru.chr2.2212 Acer truncatum HOM05D002316 ORTHO05D002280 6.7e-32 141.7 235 42.1
TWI38G1868 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 1.5e-31 140.6 217 43.3
FAN16G1965 Fragaria x ananassa HOM05D002316 ORTHO05D002280 2.5e-31 139.8 214 44.9
Cc05_g11320 Coffea canephora HOM05D002316 ORTHO05D002280 3.3e-31 139.4 224 46.4
MD11G1260000 Malus domestica HOM05D002316 ORTHO05D002280 3.3e-31 139.4 213 46.5
FvH4_3g18610 Fragaria vesca HOM05D002316 ORTHO05D002280 5.7e-31 138.7 214 44.4
PGR031G2525 Punica granatum HOM05D002316 ORTHO05D002280 7.4e-31 138.3 220 45.5
SGA_v2.0_scaffold130G34313 Striga asiatica HOM05D002316 ORTHO05D002280 7.4e-31 138.3 200 46.0
AL1G61670 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 9.7e-31 137.9 209 51.2
Aa31LG10G1890 Aethionema arabicum HOM05D002316 ORTHO05D002280 2.2e-30 136.7 209 44.0
PSO063G2003 Papaver somniferum HOM05D002478 ORTHO05D002280 2.2e-30 136.7 211 51.2
FAN25G2366 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.7e-30 136.0 214 43.9
Prupe.4G170000 Prunus persica HOM05D002316 ORTHO05D002280 1.1e-29 134.4 231 41.1
CANSAT35G1069 Cannabis sativa HOM05D002316 ORTHO05D002280 1.4e-29 134.0 217 40.6
CiPaw.11G162400 Carya illinoinensis HOM05D002316 ORTHO05D002280 2.4e-29 133.3 262 40.1
BcaC08g43517 Brassica carinata HOM05D002316 ORTHO05D002280 3.1e-29 132.9 205 42.9
BolC6t35981H Brassica oleracea HOM05D002316 ORTHO05D002280 3.1e-29 132.9 205 42.9
PSO782G0144 Papaver somniferum HOM05D002478 ORTHO05D002280 4.1e-29 132.5 211 46.9
Thhalv10011596m.g Eutrema salsugineum HOM05D002316 ORTHO05D002280 5.3e-29 132.1 209 49.8
ClCG07G010030 Citrullus lanatus HOM05D002316 ORTHO05D002280 6.9e-29 131.7 221 41.2
C06p09030 Brassica napus HOM05D002316 ORTHO05D002280 9.0e-29 131.3 206 43.7
Sc03g0010430 Simmondsia chinensis HOM05D002316 ORTHO05D002280 9.0e-29 131.3 207 41.5
Thecc.07G106400 Theobroma cacao HOM05D002316 ORTHO05D002280 1.2e-28 131.0 109 62.4
C03p91300 Brassica napus HOM05D002316 ORTHO05D002280 1.5e-28 130.6 206 43.7
Lj8A150T53 Lonicera japonica HOM05D002316 ORTHO05D002280 2.0e-28 130.2 147 54.4
Potri.001G393700 Populus trichocarpa HOM05D002316 ORTHO05D002280 2.0e-28 130.2 221 50.2
EL10Ac4g08303 Beta vulgaris HOM05D002316 ORTHO05D002280 2.6e-28 129.8 208 47.6
BolC3t21445H Brassica oleracea HOM05D002316 ORTHO05D002280 3.4e-28 129.4 206 43.7
Sabra16G0258200 Salix brachista HOM05D002316 ORTHO05D002280 3.4e-28 129.4 222 49.1
THA.LOC104810445 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 3.4e-28 129.4 208 41.8
AUR62038474 Chenopodium quinoa HOM05D002316 ORTHO05D002280 5.9e-28 128.6 213 46.9
BcaC01g01372 Brassica carinata HOM05D002316 ORTHO05D002280 1.3e-27 127.5 206 43.2
BcaB04g17097 Brassica carinata HOM05D002316 ORTHO05D002280 1.7e-27 127.1 207 43.0
A06p01090 Brassica napus HOM05D002316 ORTHO05D002280 3.8e-27 125.9 205 49.3
BraA06t23336Z Brassica rapa HOM05D002316 ORTHO05D002280 3.8e-27 125.9 205 49.3
MELO3C016104.2 Cucumis melo HOM05D002316 ORTHO05D002280 1.9e-26 123.6 239 38.5
CsaV3_4G008310 Cucumis sativus L. HOM05D002316 ORTHO05D002280 2.5e-26 123.2 227 40.1
AT1G53250 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 3.2e-26 122.9 206 52.4
RcHm_v2.0_Chr5g0031441 Rosa chinensis HOM05D002316 ORTHO05D002280 7.2e-26 121.7 210 48.1
Sed0014162 Sechium edule HOM05D002316 ORTHO05D002280 9.4e-26 121.3 238 38.2
Sp1g39830 Schrenkiella parvula HOM05D002316 ORTHO05D002280 1.6e-25 120.6 206 45.1
COL.COLO4_17596 Corchorus olitorius HOM05D002316 ORTHO05D002280 4.6e-25 119.0 216 39.4
Hma1.2p1_0607F.1_g188170 Hydrangea macrophylla HOM05D002316 ORTHO05D002280 4.6e-25 119.0 87 67.8
BraA08t32224Z Brassica rapa HOM05D002316 ORTHO05D002280 1.4e-24 117.5 197 42.1
Carub.0001s4244 Capsella rubella HOM05D002316 ORTHO05D002280 3.9e-24 115.9 206 50.5
Lsat_1_v5_gn_5_127320 Lactuca sativa HOM05D000043 ORTHO05D009639 3.9e-24 115.9 205 48.3
Hund02243 Selenicereus undatus HOM05D002316 ORTHO05D002280 3.9e-24 115.9 217 41.5
ATR0733G115 Amborella trichopoda HOM05D002316 ORTHO05D002280 7.4e-23 111.7 211 37.4
A08p01710 Brassica napus HOM05D002316 ORTHO05D002280 7.4e-23 111.7 198 43.9
Duzib213G0761 Durio zibethinus HOM05D002316 ORTHO05D002280 3.1e-21 106.3 201 50.2
Glyma.12G160300 Glycine max HOM05D002316 ORTHO05D002280 9.1e-21 104.8 269 34.6
CARHR043490 Cardamine hirsuta HOM05D002316 ORTHO05D002280 1.2e-20 104.4 201 36.8
VMungo1127G0079 Vigna mungo HOM05D002316 ORTHO05D002280 4.5e-20 102.4 270 35.6
Aqoxy4G00417 Aquilegia oxysepala HOM05D002316 ORTHO05D002280 2.9e-19 99.8 207 47.3
Phvul.011G159500 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 3.8e-19 99.4 269 33.1
unitig_699.g19234 Utricularia gibba HOM05D002316 ORTHO05D002280 6.5e-19 98.6 207 37.7
SGA_v2.0_scaffold70G23709 Striga asiatica HOM05D002316 ORTHO05D002280 1.1e-18 97.8 206 36.9
arahy.Tifrunner.gnm1.ann1.BKZC9D Arachis hypogaea HOM05D002316 ORTHO05D002280 4.2e-18 95.9 188 36.2
arahy.Tifrunner.gnm1.ann1.G0VLJ9 Arachis hypogaea HOM05D002316 ORTHO05D002280 4.2e-18 95.9 188 36.2
TAR624G0466 Trochodendron aralioides HOM05D002316 ORTHO05D002280 1.6e-17 94.0 92 53.3
Lalb_Chr19g0133871 Lupinus albus HOM05D002316 ORTHO05D002280 2.7e-17 93.2 267 32.6
Lalb_Chr03g0031101 Lupinus albus HOM05D002316 ORTHO05D002280 9.7e-15 84.7 259 31.3
Medtr8g464010 Medicago truncatula HOM05D002316 ORTHO05D002280 3.7e-14 82.8 265 29.8
Lj3g0021485 Lotus japonicus HOM05D002316 ORTHO05D002280 4.1e-13 79.3 269 30.1
TPR.G11240 Trifolium pratense HOM05D002316 ORTHO05D002280 1.2e-12 77.8 176 35.8
AUR62029619 Chenopodium quinoa HOM05D002316 ORTHO05D002280 1.6e-12 77.4 210 34.3
Ca_26990_v3 Cicer arietinum L. HOM05D002316 ORTHO05D002280 5.9e-12 75.5 265 32.1
FAN11G1357 Fragaria x ananassa HOM05D002316 ORTHO05D002280 5.5e-10 68.9 55 58.2
CDE03G0166 Ceratophyllum demersum HOM05D002364 ORTHO05D002540 9.4e-10 68.2 75 48.0
HPP92_020167 Vanilla planifolia HOM05D002316 ORTHO05D002280 2.1e-09 67.0 90 43.3
BcaC07g38975 Brassica carinata HOM05D010973 ORTHO05D014088 4.7e-09 65.9 133 35.3
C02p31140 Brassica napus HOM05D010973 ORTHO05D014088 4.7e-09 65.9 133 35.3
C08p19170 Brassica napus HOM05D010973 ORTHO05D014088 4.7e-09 65.9 133 35.3
BcaC03g13719 Brassica carinata HOM05D010973 ORTHO05D014088 1.0e-08 64.7 86 45.3
C09p49360 Brassica napus HOM05D010973 ORTHO05D014088 1.0e-08 64.7 86 45.3
BolC9t57788H Brassica oleracea HOM05D010973 ORTHO05D014088 1.0e-08 64.7 86 45.3
BcaC06g34075 Brassica carinata HOM05D010973 ORTHO05D014088 1.4e-08 64.3 103 37.9
C02p25290 Brassica napus HOM05D010973 ORTHO05D014088 4.0e-08 62.8 106 39.6
Psat7g098680 Pisum sativum HOM05D002316 ORTHO05D002280 5.2e-08 62.4 85 44.7
BcaC06g34072 Brassica carinata HOM05D010973 ORTHO05D014088 6.7e-08 62.0 86 44.2
BolC7t43813H Brassica oleracea HOM05D010973 ORTHO05D014088 6.7e-08 62.0 90 40.0
AagrBONN_evm.TU.Sc2ySwM_362.2355 Anthoceros agrestis HOM05D002316 ORTHO05D002280 8.8e-08 61.6 89 40.4
Zm00001eb297560 Zea mays HOM05D002316 ORTHO05D002280 3.3e-07 59.7 152 32.9
BcaC05g26903 Brassica carinata HOM05D010973 ORTHO05D014088 1.3e-06 57.8 80 42.5
C05p27560 Brassica napus HOM05D010973 ORTHO05D014088 1.7e-06 57.4 86 43.0
BolC5t31476H Brassica oleracea HOM05D010973 ORTHO05D014088 1.7e-06 57.4 90 38.9
BcaB03g13985 Brassica carinata HOM05D010973 ORTHO05D014088 2.8e-06 56.6 154 32.5
BcaC06g34074 Brassica carinata HOM05D010973 ORTHO05D014088 4.8e-06 55.8 83 41.0


User provided reference genes

Program Settings