Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 2.2e-63 245.4 116 100.0
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.7e-36 154.1 122 65.6
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.7e-36 154.1 122 65.6
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 3.3e-35 151.8 116 67.2
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 8.2e-34 147.1 118 66.1
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.8e-33 146.0 120 61.7
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 3.5e-32 141.7 118 59.3
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 5.9e-32 141.0 107 63.6
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.3e-31 139.8 121 61.2
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 1.3e-31 139.8 119 60.5
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 1.7e-31 139.4 112 65.2
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.2e-31 139.0 107 61.7
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 2.9e-31 138.7 131 55.0
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 2.9e-31 138.7 111 59.5
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 2.9e-31 138.7 123 57.7
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 3.8e-31 138.3 105 61.9
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 3.8e-31 138.3 115 60.9
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 3.8e-31 138.3 123 56.9
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 3.8e-31 138.3 106 62.3
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 5.0e-31 137.9 115 59.1
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 5.0e-31 137.9 115 59.1
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 5.0e-31 137.9 115 58.3
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 5.0e-31 137.9 119 60.5
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 6.5e-31 137.5 114 58.8
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.5e-30 136.3 118 59.3
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.5e-30 136.3 117 57.3
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.5e-30 136.3 121 57.0
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 2.5e-30 135.6 119 58.8
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 3.2e-30 135.2 106 59.4
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.2e-30 135.2 111 60.4
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 4.2e-30 134.8 122 55.7
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 4.2e-30 134.8 117 56.4
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 4.2e-30 134.8 110 59.1
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 5.5e-30 134.4 113 61.9
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 5.5e-30 134.4 113 61.9
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 9.4e-30 133.7 109 62.4
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.2e-29 133.3 115 58.3
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 1.6e-29 132.9 122 55.7
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 1.6e-29 132.9 122 55.7
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.6e-29 132.9 120 55.8
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 1.6e-29 132.9 121 56.2
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.6e-29 132.9 100 63.0
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.6e-29 132.9 120 55.8
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.6e-29 132.9 114 55.3
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.1e-29 132.5 111 56.8
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 2.1e-29 132.5 117 56.4
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 2.1e-29 132.5 111 62.2
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 2.7e-29 132.1 120 57.5
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 2.7e-29 132.1 111 60.4
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 3.6e-29 131.7 114 57.0
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 4.7e-29 131.3 107 58.9
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.7e-29 131.3 113 57.5
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 4.7e-29 131.3 99 62.6
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 6.1e-29 131.0 121 55.4
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 6.1e-29 131.0 113 57.5
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 8.0e-29 130.6 120 55.8
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 8.0e-29 130.6 120 55.8
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 8.0e-29 130.6 118 55.9
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 8.0e-29 130.6 120 55.8
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 8.0e-29 130.6 103 61.2
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 8.0e-29 130.6 123 57.7
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.0e-28 130.2 120 55.8
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 1.0e-28 130.2 118 55.9
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 1.0e-28 130.2 118 55.9
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 1.0e-28 130.2 118 55.9
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 1.0e-28 130.2 118 55.9
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.0e-28 130.2 121 54.5
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.0e-28 130.2 103 61.2
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.0e-28 130.2 106 58.5
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 1.4e-28 129.8 110 58.2
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 1.8e-28 129.4 120 55.8
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.8e-28 129.4 103 60.2
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 1.8e-28 129.4 120 56.7
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.8e-28 129.4 99 62.6
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.8e-28 129.4 113 56.6
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.8e-28 129.4 113 56.6
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.3e-28 129.0 103 61.2
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.3e-28 129.0 103 60.2
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 2.3e-28 129.0 111 60.4
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 2.3e-28 129.0 121 56.2
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.3e-28 129.0 113 58.4
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 3.0e-28 128.6 112 55.4
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 3.0e-28 128.6 108 58.3
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 3.0e-28 128.6 104 62.5
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 3.0e-28 128.6 111 57.7
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 3.0e-28 128.6 116 56.0
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.0e-28 128.6 112 58.9
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 3.9e-28 128.3 84 65.5
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 3.9e-28 128.3 111 58.6
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 3.9e-28 128.3 114 58.8
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 3.9e-28 128.3 98 62.2
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 5.2e-28 127.9 120 55.0
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.2e-28 127.9 107 60.7
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 5.2e-28 127.9 113 60.2
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 5.2e-28 127.9 98 63.3
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 6.7e-28 127.5 120 55.8
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 8.8e-28 127.1 123 53.7
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 8.8e-28 127.1 103 61.2
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 8.8e-28 127.1 123 56.1
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.1e-27 126.7 120 55.0
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 1.1e-27 126.7 115 55.7
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 1.1e-27 126.7 115 55.7
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.1e-27 126.7 107 60.7
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 1.5e-27 126.3 103 63.1
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 2.0e-27 125.9 113 57.5
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 2.0e-27 125.9 113 56.6
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 2.0e-27 125.9 113 56.6
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.0e-27 125.9 103 59.2
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 2.0e-27 125.9 95 62.1
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 2.6e-27 125.6 107 59.8
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 3.3e-27 125.2 96 60.4
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.3e-27 125.2 116 53.4
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 3.3e-27 125.2 105 58.1
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 3.3e-27 125.2 109 56.9
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 3.3e-27 125.2 104 59.6
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 4.4e-27 124.8 95 62.1
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 4.4e-27 124.8 120 54.2
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.7e-27 124.4 95 62.1
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 7.4e-27 124.0 112 57.1
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 7.4e-27 124.0 113 54.0
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 9.7e-27 123.6 111 57.7
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 9.7e-27 123.6 101 57.4
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.3e-26 123.2 95 58.9
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.3e-26 123.2 120 53.3
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 2.2e-26 122.5 120 53.3
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 2.8e-26 122.1 100 56.0
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 2.8e-26 122.1 113 55.8
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 2.8e-26 122.1 107 56.1
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 4.8e-26 121.3 103 58.3
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.3e-26 120.9 121 53.7
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.8e-25 119.4 114 51.8
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 3.1e-25 118.6 104 53.8
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 5.3e-25 117.9 104 59.6
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 7.0e-25 117.5 95 57.9
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 2.6e-24 115.5 72 65.3
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 4.5e-24 114.8 86 60.5
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 4.5e-24 114.8 100 53.0
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 4.5e-24 114.8 81 60.5
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.1e-22 110.2 81 56.8
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.1e-21 105.9 81 55.6
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 2.7e-21 105.5 98 56.1
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 6.8e-20 100.9 97 47.4
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.2e-19 100.1 64 67.2
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 1.1e-17 93.6 77 49.4
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 5.3e-17 91.3 69 58.0
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 8.5e-15 84.0 109 36.7
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 4.2e-14 81.6 54 70.4
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 7.2e-14 80.9 79 45.6
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 7.2e-14 80.9 70 48.6
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 2.1e-13 79.3 58 56.9
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 6.1e-13 77.8 95 42.1
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.0e-11 72.8 73 47.9
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.1e-09 67.0 69 49.3
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 1.1e-09 67.0 56 50.0
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 1.9e-06 56.2 42 61.9


User provided reference genes

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