Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043446 Camellia sinensis var. sinensis HOM05D005998 ORTHO05D007664 5.0e-160 568.2 387 100.0
Actinidia23131 Actinidia chinensis HOM05D005998 ORTHO05D007664 1.2e-105 387.5 366 81.7
Lj2A1109T75 Lonicera japonica HOM05D005998 ORTHO05D007664 1.2e-97 360.9 363 61.4
Atru.chr6.3489 Acer truncatum HOM05D005998 ORTHO05D007664 4.9e-83 312.4 353 69.4
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.9e-82 310.5 355 47.6
TAR362G0769 Trochodendron aralioides HOM05D005998 ORTHO05D007664 7.1e-82 308.5 356 71.3
Thecc.01G205300 Theobroma cacao HOM05D005998 ORTHO05D007664 2.1e-81 307.0 353 71.4
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 1.8e-80 303.9 356 51.7
PGR083G1807 Punica granatum HOM05D005998 ORTHO05D007664 3.0e-80 303.1 360 70.6
CANSAT25G0419 Cannabis sativa HOM05D005998 ORTHO05D007664 8.7e-80 301.6 350 68.3
TWI75G0247 Tripterygium wilfordii HOM05D005998 ORTHO05D007664 8.7e-80 301.6 356 62.1
COL.COLO4_29925 Corchorus olitorius HOM05D005998 ORTHO05D007664 5.6e-79 298.9 353 68.0
Nitab4.5_0003952g0080 Nicotiana tabacum HOM05D005998 ORTHO05D007664 5.6e-79 298.9 362 65.5
Ciclev10015543m.g Citrus clementina HOM05D005998 ORTHO05D007664 6.2e-78 295.4 361 65.4
QL09p045684 Quercus lobata HOM05D005998 ORTHO05D007664 3.1e-77 293.1 384 64.6
PSO573G0021 Papaver somniferum HOM05D005998 ORTHO05D007664 1.2e-76 291.2 357 60.5
Peaxi162Scf00372g00061 Petunia axillaris HOM05D005998 ORTHO05D007664 3.4e-76 289.7 362 63.0
AT3G07550 Arabidopsis thaliana HOM05D005998 ORTHO05D007664 9.9e-76 288.1 353 65.7
Nitab4.5_0002641g0010 Nicotiana tabacum HOM05D005998 ORTHO05D007664 9.9e-76 288.1 362 64.4
Gohir.A11G144800 Gossypium hirsutum HOM05D005998 ORTHO05D007664 2.2e-75 287.0 353 68.3
Prupe.8G184400 Prunus persica HOM05D005998 ORTHO05D007664 6.4e-75 285.4 351 70.4
PGSC0003DMG400020641 Solanum tuberosum HOM05D005998 ORTHO05D007664 6.4e-75 285.4 362 63.8
Potri.017G056400 Populus trichocarpa HOM05D005998 ORTHO05D007664 1.9e-74 283.9 352 69.3
EL10Ac5g10571 Beta vulgaris HOM05D005998 ORTHO05D007664 2.5e-74 283.5 352 61.4
Cc02_g30680 Coffea canephora HOM05D005998 ORTHO05D007664 3.2e-74 283.1 357 61.3
AL3G18890 Arabidopsis lyrata HOM05D005998 ORTHO05D007664 4.2e-74 282.7 353 65.2
Sp3g06470 Schrenkiella parvula HOM05D005998 ORTHO05D007664 4.2e-74 282.7 353 64.3
Gohir.D11G153100 Gossypium hirsutum HOM05D005998 ORTHO05D007664 5.5e-74 282.3 353 67.7
Gorai.007G162000 Gossypium raimondii HOM05D005998 ORTHO05D007664 5.5e-74 282.3 353 67.7
Manes.13G057500 Manihot esculenta HOM05D005998 ORTHO05D007664 1.6e-73 280.8 355 66.8
BraA05t22797Z Brassica rapa HOM05D005998 ORTHO05D007664 2.7e-73 280.0 354 56.8
Thhalv10020882m.g Eutrema salsugineum HOM05D005998 ORTHO05D007664 2.7e-73 280.0 353 64.6
CAN.G181.48 Capsicum annuum HOM05D005998 ORTHO05D007664 8.7e-72 275.0 362 53.9
RcHm_v2.0_Chr6g0281791 Rosa chinensis HOM05D005998 ORTHO05D007664 8.7e-72 275.0 354 65.8
Carub.0003s0710 Capsella rubella HOM05D005998 ORTHO05D007664 1.5e-71 274.2 353 62.3
Solyc06g007680.1 Solanum lycopersicum HOM05D005998 ORTHO05D007664 3.3e-71 273.1 362 62.7
Sopen06g002580 Solanum pennellii HOM05D005998 ORTHO05D007664 9.6e-71 271.6 362 62.2
PSO017G2023 Papaver somniferum HOM05D005998 ORTHO05D007664 6.2e-70 268.9 375 58.9
THA.LOC104819025 Tarenaya hassleriana HOM05D005998 ORTHO05D007664 6.2e-70 268.9 353 64.0
MD05G1151800 Malus domestica HOM05D005998 ORTHO05D007664 5.3e-69 265.8 362 65.5
Migut.N00691 Erythranthe guttata HOM05D005998 ORTHO05D007664 6.9e-69 265.4 355 51.3
A05p40660 Brassica napus HOM05D005998 ORTHO05D007664 2.0e-68 263.8 354 55.1
Sabra17G0050000 Salix brachista HOM05D005998 ORTHO05D007664 1.7e-67 260.8 351 67.2
Sabra17G0048300 Salix brachista HOM05D005998 ORTHO05D007664 4.9e-67 259.2 351 67.0
Sc05g0001600 Simmondsia chinensis HOM05D005998 ORTHO05D007664 1.1e-66 258.1 352 49.4
BcaC05g29548 Brassica carinata HOM05D005998 ORTHO05D007664 2.5e-66 256.9 265 57.7
AUR62008051 Chenopodium quinoa HOM05D005998 ORTHO05D007664 9.3e-66 255.0 355 67.3
Hma1.2p1_1756F.1_g301020 Hydrangea macrophylla HOM05D005998 ORTHO05D007664 1.6e-65 254.2 355 51.5
AUR62028626 Chenopodium quinoa HOM05D005998 ORTHO05D007664 5.1e-64 249.2 267 64.4
BolC5t34631H Brassica oleracea HOM05D005998 ORTHO05D007664 4.3e-63 246.1 353 59.5
C05p59770 Brassica napus HOM05D005998 ORTHO05D007664 5.7e-63 245.7 353 59.2
Aa31LG5G18090 Aethionema arabicum HOM05D005998 ORTHO05D007664 9.7e-63 245.0 264 56.8
FvH4_2g17281 Fragaria vesca HOM05D005998 ORTHO05D007664 2.8e-62 243.4 354 62.7
Cpa.g.sc8.24 Carica papaya HOM05D005998 ORTHO05D007664 1.1e-61 241.5 360 51.9
PSO573G0042 Papaver somniferum HOM05D005998 ORTHO05D007664 2.4e-61 240.4 349 55.9
Nn1g09548 Nelumbo nucifera HOM05D005998 ORTHO05D007664 4.5e-60 236.1 229 67.7
Duzib211G0440 Durio zibethinus HOM05D005998 ORTHO05D007664 5.9e-60 235.7 305 70.8
BcaC05g29549 Brassica carinata HOM05D005998 ORTHO05D007664 8.5e-59 231.9 267 54.3
Lsat_1_v5_gn_8_98580 Lactuca sativa HOM05D005998 ORTHO05D007664 3.2e-58 229.9 384 43.8
Eucgr.H00683 Eucalyptus grandis HOM05D005998 ORTHO05D007664 2.3e-56 223.8 359 59.6
CARHR082230 Cardamine hirsuta HOM05D005998 ORTHO05D007664 5.7e-55 219.2 353 56.7
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 1.5e-52 211.1 365 47.7
Haze_03601 Corylus avellana HOM05D005998 ORTHO05D007664 3.4e-52 209.9 365 47.4
Lsat_1_v5_gn_4_46380 Lactuca sativa HOM05D005998 ORTHO05D007664 6.7e-48 195.7 365 50.4
PSO573G0007 Papaver somniferum HOM05D005998 ORTHO05D007664 5.7e-47 192.6 372 43.5
PSO017G6055 Papaver somniferum HOM05D005998 ORTHO05D007664 2.2e-46 190.7 372 43.8
DCAR_000509 Daucus carota HOM05D005998 ORTHO05D007664 1.8e-45 187.6 242 70.7
HanXRQChr08g0231291 Helianthus annuus HOM05D005998 ORTHO05D007664 1.8e-45 187.6 284 50.7
HanXRQChr08g0231301 Helianthus annuus HOM05D005998 ORTHO05D007664 1.8e-45 187.6 284 50.7
SEGI_17775 Sequoiadendron giganteum HOM05D005998 ORTHO05D007664 7.0e-45 185.7 295 45.8
PSO017G3521 Papaver somniferum HOM05D005998 ORTHO05D007664 9.1e-45 185.3 300 49.3
Lj3g0009731 Lotus japonicus HOM05D005998 ORTHO05D007664 2.0e-44 184.1 356 56.2
HanXRQChr08g0231281 Helianthus annuus HOM05D005998 ORTHO05D007664 5.0e-43 179.5 284 50.4
RcHm_v2.0_Chr5g0064201 Rosa chinensis HOM05D005998 ORTHO05D007664 5.5e-42 176.0 254 51.2
Dinv28780 Davidia involucrata HOM05D005998 ORTHO05D003775 2.7e-41 173.7 171 76.6
ECA247G3308 Erigeron canadensis HOM05D005998 ORTHO05D007664 2.7e-41 173.7 267 50.6
Glyma.07G060100 Glycine max HOM05D005998 ORTHO05D007664 4.7e-41 172.9 366 54.9
HPP92_024394 Vanilla planifolia HOM05D005998 ORTHO05D007664 2.3e-40 170.6 266 49.2
Ca_23566_v3 Cicer arietinum L. HOM05D005998 ORTHO05D007664 3.9e-40 169.9 368 55.2
TPR.G5126 Trifolium pratense HOM05D005998 ORTHO05D007664 5.2e-40 169.5 356 56.2
Medtr8g028140 Medicago truncatula HOM05D005998 ORTHO05D007664 6.7e-40 169.1 365 54.8
Psat4g158400 Pisum sativum HOM05D005998 ORTHO05D007664 1.8e-37 161.0 365 53.7
PSO675G7594 Papaver somniferum HOM05D005998 ORTHO05D007664 2.0e-31 141.0 267 45.3
PSO017G0196 Papaver somniferum HOM05D005998 ORTHO05D007664 9.1e-29 132.1 260 41.9
Rhsim13G0055600 Rhododendron simsii HOM05D005998 ORTHO05D007664 9.1e-29 132.1 306 33.3
PSO541G3130 Papaver somniferum HOM05D005998 ORTHO05D007664 2.2e-27 127.5 266 44.4
RcHm_v2.0_Chr7g0205731 Rosa chinensis HOM05D005998 ORTHO05D007664 8.5e-27 125.6 86 67.4
ECA247G2512 Erigeron canadensis HOM05D005998 ORTHO05D007664 5.5e-26 122.9 282 34.4
MD10G1146000 Malus domestica HOM05D005998 ORTHO05D007664 9.4e-26 122.1 268 47.0
ATR0743G036 Amborella trichopoda HOM05D005998 ORTHO05D007664 1.6e-25 121.3 252 40.5
Os11g0264200 Oryza sativa ssp. japonica HOM05D005998 ORTHO05D007664 1.6e-25 121.3 267 40.8
ECA247G1983 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.8e-24 117.9 316 32.0
CDE08G0319 Ceratophyllum demersum HOM05D005998 ORTHO05D007664 4.0e-24 116.7 144 56.2
Duzib138G0171 Durio zibethinus HOM05D005998 ORTHO05D007664 2.0e-23 114.4 86 61.6
ECA247G2923 Erigeron canadensis HOM05D005998 ORTHO05D003386 4.4e-23 113.2 273 42.1
PSO017G5443 Papaver somniferum HOM05D005998 ORTHO05D007664 7.5e-23 112.5 214 46.7
Zm00001eb112540 Zea mays HOM05D005998 ORTHO05D007664 9.8e-23 112.1 278 39.2
PSO675G8174 Papaver somniferum HOM05D005998 ORTHO05D007664 2.2e-22 110.9 261 44.1
PSO218G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-21 108.6 262 43.1
PSO340G0001 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-21 108.6 262 43.1
PSO675G6053 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-21 108.6 262 43.1
PSO675G6885 Papaver somniferum HOM05D005998 ORTHO05D007664 1.1e-21 108.6 262 43.1
ECA232G4734 Erigeron canadensis HOM05D005998 ORTHO05D007664 2.3e-19 100.9 268 39.9
PSO837G0060 Papaver somniferum HOM05D005998 ORTHO05D007664 3.8e-19 100.1 265 40.0
PSO837G0015 Papaver somniferum HOM05D005998 ORTHO05D007664 6.6e-19 99.4 273 39.6
PSO017G6716 Papaver somniferum HOM05D005998 ORTHO05D007664 4.2e-18 96.7 143 42.0
Mapoly0166s0007 Marchantia polymorpha HOM05D005998 ORTHO05D007664 1.2e-17 95.1 287 37.3
ECA247G3549 Erigeron canadensis HOM05D005998 ORTHO05D007664 4.7e-17 93.2 356 40.7
Zm00001eb182340 Zea mays HOM05D005998 ORTHO05D015715 4.7e-17 93.2 86 54.7
Oeu064702.2 Olea europaea HOM05D005998 ORTHO05D007664 8.0e-17 92.4 121 71.1
Zm00001eb048880 Zea mays HOM05D005998 ORTHO05D015715 1.4e-16 91.7 86 54.7
ECA247G1593 Erigeron canadensis HOM05D005998 ORTHO05D007664 2.0e-15 87.8 239 30.5
PSO017G7250 Papaver somniferum HOM05D005998 ORTHO05D007664 2.0e-15 87.8 227 44.9
PSO675G5104 Papaver somniferum HOM05D005998 ORTHO05D007664 3.4e-15 87.0 211 43.6
PSO541G0922 Papaver somniferum HOM05D005998 ORTHO05D007664 9.8e-15 85.5 186 46.8
PSO017G0268 Papaver somniferum HOM05D005998 ORTHO05D007664 2.8e-14 84.0 174 36.2
PSO017G2859 Papaver somniferum HOM05D005998 ORTHO05D007664 2.8e-14 84.0 223 46.6
PSO017G4719 Papaver somniferum HOM05D005998 ORTHO05D007664 3.7e-14 83.6 145 35.2
PSO017G6639 Papaver somniferum HOM05D005998 ORTHO05D007664 5.4e-13 79.7 158 35.4
PSO017G3446 Papaver somniferum HOM05D005998 ORTHO05D007664 3.3e-10 70.5 155 31.0
ECA247G1907 Erigeron canadensis HOM05D005998 ORTHO05D007664 1.2e-09 68.6 262 45.4
PSO573G0016 Papaver somniferum HOM05D005998 ORTHO05D007664 6.1e-09 66.2 204 34.3
PSO573G0035 Papaver somniferum HOM05D005998 ORTHO05D007664 2.3e-08 64.3 302 26.5
COL.COLO4_13978 Corchorus olitorius HOM05D002762 ORTHO05D004643 4.0e-08 63.5 173 29.5
DCAR_003371 Daucus carota HOM05D000036 ORTHO05D002105 4.0e-08 63.5 93 36.6
CAN.G1273.38 Capsicum annuum HOM05D002125 ORTHO05D002105 6.8e-08 62.8 109 33.0
Duzib151G0782 Durio zibethinus HOM05D002762 ORTHO05D004643 6.8e-08 62.8 173 30.1
CiPaw.07G023900 Carya illinoinensis HOM05D002125 ORTHO05D002105 1.2e-07 62.0 87 36.8
arahy.Tifrunner.gnm1.ann1.H7FQDY Arachis hypogaea HOM05D002125 ORTHO05D002105 2.6e-07 60.8 86 36.0
arahy.Tifrunner.gnm1.ann1.PS6LJB Arachis hypogaea HOM05D002125 ORTHO05D002105 2.6e-07 60.8 86 36.0
Cfa006657 Carpinus fangiana HOM05D002125 ORTHO05D002105 4.4e-07 60.1 86 37.2
Medtr1g018790 Medicago truncatula HOM05D001905 ORTHO05D001820 4.4e-07 60.1 139 29.5
SMO334G0119 Selaginella moellendorffii HOM05D001905 ORTHO05D001820 4.4e-07 60.1 142 31.0
Eucgr.B01905 Eucalyptus grandis HOM05D002125 ORTHO05D002105 5.8e-07 59.7 109 32.1
PSO017G7319 Papaver somniferum HOM05D005998 ORTHO05D007664 5.8e-07 59.7 85 41.2
GSVIVG01017859001 Vitis vinifera HOM05D002762 ORTHO05D004643 1.3e-06 58.5 169 27.2
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 1.7e-06 58.2 169 27.8
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 1.7e-06 58.2 97 33.0
PSO017G7049 Papaver somniferum HOM05D005998 ORTHO05D007664 2.2e-06 57.8 89 33.7
Sed0001779 Sechium edule HOM05D002762 ORTHO05D004643 2.9e-06 57.4 167 28.7
Gohir.D09G232700 Gossypium hirsutum HOM05D002762 ORTHO05D004643 3.7e-06 57.0 175 27.4
Gorai.006G255600 Gossypium raimondii HOM05D002762 ORTHO05D004643 3.7e-06 57.0 175 27.4
PGSC0003DMG400024768 Solanum tuberosum HOM05D002125 ORTHO05D002105 3.7e-06 57.0 109 33.9
MD16G1180300 Malus domestica HOM05D002762 ORTHO05D004643 4.9e-06 56.6 167 26.9
Thhalv10024700m.g Eutrema salsugineum HOM05D002762 ORTHO05D004643 6.4e-06 56.2 158 31.0
THA.LOC104802549 Tarenaya hassleriana HOM05D002762 ORTHO05D004643 8.3e-06 55.8 180 28.3
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 8.3e-06 55.8 143 32.2


User provided reference genes

Program Settings