Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 2.9e-61 238.4 125 100.0
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.4e-58 229.6 124 96.8
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 2.2e-16 89.4 42 97.6
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 2.2e-16 89.4 42 97.6
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.0e-13 80.5 42 83.3
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.0e-13 80.5 42 83.3
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 3.9e-13 78.6 42 81.0
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 3.9e-13 78.6 42 78.6
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 3.9e-13 78.6 41 85.4
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 5.1e-13 78.2 42 83.3
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 5.1e-13 78.2 42 83.3
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 6.6e-13 77.8 42 78.6
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 1.5e-12 76.6 42 76.2
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 1.9e-12 76.3 42 76.2
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 1.9e-12 76.3 42 76.2
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 4.3e-12 75.1 42 76.2
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 5.6e-12 74.7 63 57.1
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 5.6e-12 74.7 42 76.2
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 5.6e-12 74.7 42 78.6
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 7.3e-12 74.3 45 71.1
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.6e-11 73.2 42 76.2
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 1.6e-11 73.2 42 76.2
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 1.6e-11 73.2 42 76.2
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 2.1e-11 72.8 42 73.8
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.1e-11 72.8 42 73.8
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 2.1e-11 72.8 93 49.5
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 2.8e-11 72.4 64 57.8
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 2.8e-11 72.4 42 73.8
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 2.8e-11 72.4 42 73.8
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 2.8e-11 72.4 42 78.6
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 3.6e-11 72.0 42 78.6
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 3.6e-11 72.0 45 66.7
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 4.7e-11 71.6 42 76.2
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 8.1e-11 70.9 42 73.8
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 8.1e-11 70.9 42 76.2
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 8.1e-11 70.9 42 71.4
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 8.1e-11 70.9 42 73.8
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 1.4e-10 70.1 42 71.4
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 1.4e-10 70.1 45 68.9
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 1.4e-10 70.1 45 68.9
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 1.8e-10 69.7 43 69.8
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.8e-10 69.7 42 73.8
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 1.8e-10 69.7 42 73.8
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 1.8e-10 69.7 42 73.8
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 1.8e-10 69.7 42 71.4
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 2.3e-10 69.3 42 76.2
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 2.3e-10 69.3 91 46.2
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 2.3e-10 69.3 42 69.0
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 3.1e-10 68.9 42 71.4
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 3.1e-10 68.9 42 71.4
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 4.0e-10 68.6 42 69.0
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 4.0e-10 68.6 42 71.4
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 4.0e-10 68.6 64 54.7
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 5.2e-10 68.2 42 73.8
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 5.2e-10 68.2 42 69.0
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 6.8e-10 67.8 42 71.4
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 6.8e-10 67.8 42 71.4
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 6.8e-10 67.8 42 71.4
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 6.8e-10 67.8 42 71.4
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 6.8e-10 67.8 42 71.4
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 6.8e-10 67.8 42 71.4
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 8.9e-10 67.4 42 69.0
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 1.2e-09 67.0 42 69.0
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 1.2e-09 67.0 45 66.7
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 1.2e-09 67.0 42 69.0
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 1.5e-09 66.6 42 71.4
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 1.5e-09 66.6 42 69.0
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 2.0e-09 66.2 45 68.9
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 2.0e-09 66.2 42 69.0
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 2.0e-09 66.2 42 66.7
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 2.0e-09 66.2 42 71.4
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 2.0e-09 66.2 42 71.4
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 3.4e-09 65.5 42 69.0
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 3.4e-09 65.5 42 69.0
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 4.4e-09 65.1 42 69.0
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 4.4e-09 65.1 42 69.0
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 4.4e-09 65.1 42 66.7
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 5.8e-09 64.7 42 69.0
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 5.8e-09 64.7 40 70.0
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 5.8e-09 64.7 42 64.3
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 5.8e-09 64.7 42 71.4
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 7.5e-09 64.3 45 66.7
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 9.9e-09 63.9 42 69.0
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 9.9e-09 63.9 68 52.9
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 9.9e-09 63.9 42 66.7
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 9.9e-09 63.9 42 66.7
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 9.9e-09 63.9 42 66.7
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.3e-08 63.5 68 51.5
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 1.7e-08 63.2 42 64.3
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 2.2e-08 62.8 45 64.4
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 2.9e-08 62.4 45 64.4
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 2.9e-08 62.4 42 61.9
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 3.7e-08 62.0 42 69.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 3.7e-08 62.0 42 64.3
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 6.4e-08 61.2 107 41.1
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 6.4e-08 61.2 42 64.3
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 1.4e-07 60.1 105 41.0
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 1.9e-07 59.7 42 64.3
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 3.2e-07 58.9 42 61.9
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.2e-06 57.0 40 57.5
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.2e-06 57.0 40 57.5
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.6e-06 56.6 42 57.1
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.6e-06 55.1 44 56.8


User provided reference genes

Program Settings