Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.8e-30 134.8 76 100.0
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.2e-28 129.4 76 97.4
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 1.4e-26 122.5 61 90.2
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.9e-26 122.1 60 91.7
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 4.1e-26 120.9 61 86.9
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 5.4e-26 120.6 59 91.5
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 9.2e-26 119.8 64 89.1
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.6e-25 119.0 61 85.2
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 2.0e-25 118.6 61 88.5
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 2.0e-25 118.6 61 88.5
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.0e-25 118.6 59 89.8
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.0e-25 118.6 59 89.8
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 2.0e-25 118.6 59 89.8
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 2.7e-25 118.2 61 88.5
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 4.6e-25 117.5 62 88.7
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 4.6e-25 117.5 59 88.1
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 7.8e-25 116.7 61 85.2
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 7.8e-25 116.7 60 88.3
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 1.3e-24 115.9 59 86.4
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 1.3e-24 115.9 63 87.3
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 1.7e-24 115.5 61 83.6
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 2.3e-24 115.2 59 84.7
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 3.0e-24 114.8 62 85.5
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 3.9e-24 114.4 64 85.9
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 5.0e-24 114.0 59 84.7
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 5.0e-24 114.0 57 89.5
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 5.0e-24 114.0 57 89.5
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 5.0e-24 114.0 61 85.2
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 8.6e-24 113.2 61 85.2
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.1e-23 112.8 59 84.7
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.1e-23 112.8 58 86.2
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 1.5e-23 112.5 59 83.1
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.5e-23 112.5 61 82.0
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 1.5e-23 112.5 62 85.5
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 1.9e-23 112.1 61 83.6
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 1.9e-23 112.1 59 84.7
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 1.9e-23 112.1 61 83.6
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 2.5e-23 111.7 59 83.1
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 4.3e-23 110.9 61 82.0
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 4.3e-23 110.9 61 82.0
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 4.3e-23 110.9 61 82.0
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 4.3e-23 110.9 61 82.0
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 5.6e-23 110.5 53 92.5
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 7.3e-23 110.2 59 84.7
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 9.5e-23 109.8 59 83.1
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 2.8e-22 108.2 57 84.2
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 4.7e-22 107.5 59 79.7
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.1e-21 106.3 57 82.5
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 1.1e-21 106.3 61 82.0
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.4e-21 105.9 57 82.5
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 1.4e-21 105.9 57 82.5
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 1.4e-21 105.9 58 81.0
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 1.8e-21 105.5 61 75.4
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.8e-21 105.5 53 88.7
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 1.8e-21 105.5 58 79.3
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 1.8e-21 105.5 58 82.8
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 3.1e-21 104.8 54 87.0
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.0e-21 104.4 53 88.7
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 6.8e-21 103.6 52 86.5
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 8.9e-21 103.2 61 75.4
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 8.9e-21 103.2 61 75.4
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 8.9e-21 103.2 61 75.4
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 8.9e-21 103.2 59 78.0
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 1.2e-20 102.8 61 78.7
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.2e-20 102.8 61 72.1
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 1.5e-20 102.4 51 88.2
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 2.6e-20 101.7 61 73.8
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 3.4e-20 101.3 61 73.8
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 3.4e-20 101.3 61 73.8
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 3.4e-20 101.3 61 73.8
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 3.4e-20 101.3 61 73.8
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 3.4e-20 101.3 61 73.8
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 3.4e-20 101.3 61 72.1
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 3.4e-20 101.3 61 73.8
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 4.4e-20 100.9 61 73.8
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 5.8e-20 100.5 54 85.2
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 7.5e-20 100.1 61 68.9
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 7.5e-20 100.1 59 74.6
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 7.5e-20 100.1 59 74.6
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 7.5e-20 100.1 59 74.6
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 7.5e-20 100.1 59 74.6
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 7.5e-20 100.1 59 74.6
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 9.9e-20 99.8 61 72.1
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 9.9e-20 99.8 61 72.1
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.3e-19 99.4 59 72.9
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.3e-19 99.4 61 72.1
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 1.3e-19 99.4 47 95.7
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.3e-19 99.4 61 68.9
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 2.2e-19 98.6 59 71.2
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 2.2e-19 98.6 59 74.6
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 2.2e-19 98.6 61 68.9
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 3.7e-19 97.8 61 70.5
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 3.7e-19 97.8 63 71.4
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 3.7e-19 97.8 57 77.2
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 3.7e-19 97.8 57 77.2
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.7e-19 97.8 47 93.6
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 6.4e-19 97.1 54 79.6
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.1e-18 96.3 63 71.4
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.4e-18 95.9 52 80.8
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 1.9e-18 95.5 57 77.2
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 1.9e-18 95.5 57 77.2
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 2.4e-18 95.1 54 81.5
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 3.2e-18 94.7 54 79.6
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 5.4e-18 94.0 54 75.9
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 9.2e-18 93.2 59 71.2
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 9.2e-18 93.2 54 79.6
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 1.2e-17 92.8 59 72.9
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 2.7e-17 91.7 46 87.0
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.0e-16 89.7 55 74.5
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 4.3e-15 84.3 61 63.9
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 4.3e-15 84.3 54 72.2
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 4.3e-15 84.3 47 78.7
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 7.3e-15 83.6 45 77.8
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 4.7e-14 80.9 54 63.0
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.2e-14 80.5 54 66.7
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 8.1e-14 80.1 56 64.3
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 4.0e-13 77.8 51 68.6
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 7.6e-12 73.6 46 67.4
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 2.9e-11 71.6 37 81.1
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 2.9e-11 71.6 45 66.7
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 4.1e-10 67.8 30 93.3
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 9.2e-10 66.6 51 56.9
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 2.1e-09 65.5 41 68.3
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 3.0e-08 61.6 56 51.8
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 3.0e-08 61.6 56 51.8
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 3.0e-08 61.6 53 50.9
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 3.9e-08 61.2 39 69.2
Actinidia00143 Actinidia chinensis HOM05D005857 ORTHO05D007193 3.3e-07 58.2 36 77.8
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 5.6e-07 57.4 53 45.3
Nn3g18517 Nelumbo nucifera HOM05D005857 ORTHO05D007193 6.2e-06 53.9 35 77.1


User provided reference genes

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