Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043384 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.4e-60 233.8 112 100.0
CSS0013581 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.8e-47 191.8 112 85.7
CSS0010947 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.1e-22 108.2 80 70.0
Atru.chr4.1540 Acer truncatum HOM05D000002 ORTHO05D000001 1.0e-20 103.6 103 54.4
RcHm_v2.0_Chr2g0154461 Rosa chinensis HOM05D000002 ORTHO05D000001 2.2e-20 102.4 102 53.9
RcHm_v2.0_Chr7g0198271 Rosa chinensis HOM05D000002 ORTHO05D000001 2.2e-20 102.4 102 53.9
CSS0040283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.0e-20 101.3 103 53.4
Nn2g14659 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.1e-19 100.1 102 52.0
QL11p047249 Quercus lobata HOM05D000002 ORTHO05D000001 1.5e-19 99.8 102 52.0
Hma1.2p1_1768F.1_g301590 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.9e-19 99.4 104 52.9
CSS0016567 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-19 98.6 102 51.0
CSS0015841 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.2e-19 98.2 109 47.7
CSS0046072 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.2e-19 98.2 109 47.7
CSS0050078 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.5e-19 97.8 109 47.7
Hma1.2p1_1719F.1_g299230 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.2e-19 97.4 104 51.9
MD01G1101100 Malus domestica HOM05D000002 ORTHO05D000001 7.2e-19 97.4 103 50.5
Rhsim09G0033700 Rhododendron simsii HOM05D000002 ORTHO05D000001 7.2e-19 97.4 109 47.7
Hma1.2p1_0774F.1_g216300 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.4e-19 97.1 102 51.0
Manes.10G112229 Manihot esculenta HOM05D000002 ORTHO05D000001 9.4e-19 97.1 82 61.0
Hma1.2p1_0184F.1_g081330 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-18 96.7 100 53.0
Rhsim01G0080600 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.1e-18 95.9 109 48.6
Rhsim02G0093500 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.1e-18 95.9 109 46.8
CSS0013769 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-18 95.1 109 46.8
CSS0005068 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.0e-18 94.0 80 61.2
Hma1.2p1_1498F.1_g287120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.0e-17 93.6 102 51.0
Rhsim03G0172600 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.0e-17 92.0 81 59.3
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.0e-17 92.0 100 49.0
RhsimUnG0178000 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.0e-17 92.0 81 59.3
RhsimUnG0182300 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.0e-17 92.0 81 56.8
Nn6g34560 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.2e-17 91.3 101 48.5
Nn6g34561 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.2e-17 91.3 101 48.5
CSS0044856 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.7e-17 90.9 104 46.2
CSS0047274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.7e-17 90.9 103 46.6
Hma1.2p1_2049F.1_g312480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.7e-17 90.9 101 48.5
Nn2g12419 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.7e-17 90.9 101 48.5
Sopen03g025100 Solanum pennellii HOM05D000002 ORTHO05D000001 6.7e-17 90.9 108 49.1
Nn2g13324 Nelumbo nucifera HOM05D000002 ORTHO05D000001 8.8e-17 90.5 99 52.5
Sopen05g010210 Solanum pennellii HOM05D000002 ORTHO05D000001 8.8e-17 90.5 80 57.5
Sopen10g016240 Solanum pennellii HOM05D000002 ORTHO05D000001 8.8e-17 90.5 80 57.5
Sopen10g031560 Solanum pennellii HOM05D000002 ORTHO05D000001 8.8e-17 90.5 80 57.5
Sopen11g010630 Solanum pennellii HOM05D000002 ORTHO05D000001 8.8e-17 90.5 80 57.5
Hma1.2p1_0176F.1_g077340 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-16 90.1 101 47.5
Nn4g24384 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.2e-16 90.1 101 48.5
Nn2g15368 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.5e-16 89.7 99 46.5
SHI52580 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-16 89.7 78 55.1
SHI53128 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-16 89.7 78 55.1
CSS0042530 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-16 89.4 80 52.5
CSS0046990 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-16 89.4 61 68.9
Ciclev10013956m.g Citrus clementina HOM05D000002 ORTHO05D000001 2.0e-16 89.4 138 43.5
CSS0002244 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-16 89.0 94 48.9
CSS0012950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-16 89.0 103 46.6
CSS0017873 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-16 89.0 103 45.6
Sopen01g017420 Solanum pennellii HOM05D000002 ORTHO05D000001 3.3e-16 88.6 80 55.0
Sopen05g010950 Solanum pennellii HOM05D000002 ORTHO05D000001 3.3e-16 88.6 80 55.0
Sopen05g018370 Solanum pennellii HOM05D000002 ORTHO05D000001 3.3e-16 88.6 80 55.0
Sopen06g017010 Solanum pennellii HOM05D000002 ORTHO05D000001 3.3e-16 88.6 80 55.0
EL10Ac8g19578 Beta vulgaris HOM05D000002 ORTHO05D000001 4.4e-16 88.2 103 45.6
Lalb_Chr23g0274091 Lupinus albus HOM05D000002 ORTHO05D000001 4.4e-16 88.2 80 56.2
Nn4g26209 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.4e-16 88.2 80 56.2
Nn1g04729 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.7e-16 87.8 109 47.7
CSS0000038 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.5e-16 87.4 80 52.5
CSS0024481 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.5e-16 87.4 78 53.8
CSS0041440 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.5e-16 87.4 110 46.4
Sopen10g021260 Solanum pennellii HOM05D000002 ORTHO05D000001 7.5e-16 87.4 80 60.0
CSS0017329 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-15 86.7 103 44.7
CSS0020765 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-15 86.7 78 53.8
Nn5g30083 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.3e-15 86.7 81 55.6
Manes.09G095934 Manihot esculenta HOM05D000002 ORTHO05D000001 1.7e-15 86.3 109 45.0
Nn2g10460 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.7e-15 86.3 109 45.9
Nn4g26285 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.7e-15 86.3 78 55.1
Sopen01g009120 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-15 86.3 80 58.8
Sopen07g005890 Solanum pennellii HOM05D000002 ORTHO05D000001 2.2e-15 85.9 80 55.0
CANSAT01G2627 Cannabis sativa HOM05D000002 ORTHO05D000001 2.8e-15 85.5 104 46.2
Sopen01g013480 Solanum pennellii HOM05D000002 ORTHO05D000001 2.8e-15 85.5 78 59.0
Nn1g02421 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.7e-15 85.1 94 50.0
CSS0040082 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.3e-15 84.3 98 46.9
Hma1.2p1_0414F.1_g147800 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.3e-15 84.3 99 46.5
Hma1.2p1_0171F.1_g075850 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.2e-15 84.0 106 42.5
Sopen11g022020 Solanum pennellii HOM05D000002 ORTHO05D000001 8.2e-15 84.0 80 52.5
CSS0021106 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-14 83.6 70 61.4
FvH4_6g43841 Fragaria vesca HOM05D000002 ORTHO05D000001 1.1e-14 83.6 78 57.7
Nn1g07710 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.1e-14 83.6 78 53.8
CSS0034655 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-14 83.2 61 67.2
Nn1g06669 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.4e-14 83.2 109 45.9
RcHm_v2.0_Chr1g0330731 Rosa chinensis HOM05D000002 ORTHO05D000001 1.8e-14 82.8 103 44.7
RcHm_v2.0_Chr4g0409151 Rosa chinensis HOM05D000002 ORTHO05D000001 1.8e-14 82.8 103 43.7
Sopen05g007860 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-14 82.8 80 52.5
CSS0039281 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-14 82.4 76 53.9
Nn5g28050 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.4e-14 82.4 65 61.5
CSS0045643 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-14 82.0 76 53.9
Nn8g40241 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.1e-14 82.0 99 45.5
RcHm_v2.0_Chr7g0237911 Rosa chinensis HOM05D000002 ORTHO05D000001 4.1e-14 81.6 101 44.6
Nn1g06976 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.3e-14 81.3 79 48.1
CSS0001792 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.0e-14 80.9 77 54.5
Sopen03g020180 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-14 80.9 80 55.0
Atru.chr10.1094 Acer truncatum HOM05D000002 ORTHO05D000001 1.2e-13 80.1 81 48.1
QL03p066067 Quercus lobata HOM05D000002 ORTHO05D000001 2.7e-13 79.0 72 56.9
VMungo0331G0698 Vigna mungo HOM05D000092 ORTHO05D000042 4.5e-13 78.2 78 50.0
Nn1g04728 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.7e-13 77.4 109 45.9
VMungo1309G0289 Vigna mungo HOM05D002892 ORTHO05D003224 7.7e-13 77.4 82 48.8
Nn1g02200 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.3e-12 76.6 104 42.3
Rhsim13G0212300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.3e-12 76.6 120 40.8
C03p36830 Brassica napus HOM05D000002 ORTHO05D000001 1.7e-12 76.3 81 44.4
CSS0045479 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-12 76.3 76 50.0
PSO541G3208 Papaver somniferum HOM05D000002 ORTHO05D000001 1.7e-12 76.3 84 47.6
FvH4_1g02351 Fragaria vesca HOM05D000002 ORTHO05D000001 2.9e-12 75.5 101 43.6
MSTRG.3250 Avicennia marina HOM05D000002 ORTHO05D000001 3.8e-12 75.1 122 41.0
CSS0019043 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.0e-12 74.7 98 42.9
Sopen01g013490 Solanum pennellii HOM05D000002 ORTHO05D000001 6.5e-12 74.3 80 52.5
TWI56G1078 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 1.1e-11 73.6 73 52.1
EL10Ac6g13816 Beta vulgaris HOM05D000002 ORTHO05D000001 1.9e-11 72.8 95 44.2
Sopen01g013110 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-11 72.8 104 41.3
QL09p034601 Quercus lobata HOM05D000002 ORTHO05D000001 3.2e-11 72.0 68 54.4
Hma1.2p1_0774F.1_g216290 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.2e-11 70.9 66 56.1
ECA238G0437 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.4e-11 70.5 78 44.9
Sopen01g011890 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-10 70.1 81 48.1
Hma1.2p1_0774F.1_g216320 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.1e-10 69.3 66 54.5
Medtr8g465620 Medicago truncatula HOM05D000002 ORTHO05D000001 2.1e-10 69.3 84 45.2
Nn3g21197 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.7e-10 68.9 70 50.0
ECA233G2170 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.1e-10 67.8 72 47.2
ECA246G0354 Erigeron canadensis HOM05D000230 ORTHO05D000176 8.0e-10 67.4 80 45.0
ECA232G0373 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-09 66.6 78 43.6
ECA246G0479 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-09 66.6 76 47.4
CSS0044932 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-09 66.2 94 42.6
Nn1g08143 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.8e-09 66.2 99 38.4
ECA246G4670 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-09 65.9 78 43.6
ECA234G4791 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-09 65.5 72 45.8
ECA240G2252 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-09 65.1 72 45.8
Atru.chr5.2716 Acer truncatum HOM05D000002 ORTHO05D000001 5.2e-09 64.7 87 44.8
ECA240G1585 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-09 64.7 78 42.3
Psat2g034080 Pisum sativum HOM05D000002 ORTHO05D000001 6.8e-09 64.3 60 51.7
ECA247G3331 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.8e-09 63.9 78 39.7
Psat4g144840 Pisum sativum HOM05D000002 ORTHO05D000001 8.8e-09 63.9 107 34.6
ECA240G3412 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-08 63.2 72 45.8
ECA248G1333 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-08 63.2 72 40.3
Sopen01g020600 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-08 62.8 84 40.5
CSS0025880 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-08 62.0 109 37.6
Nn1g08060 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.4e-08 62.0 68 47.1
BolC4t26198H Brassica oleracea HOM05D000002 ORTHO05D000001 4.4e-08 61.6 73 43.8
ECA232G4093 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.4e-08 61.6 78 39.7
FvH4_7g13272 Fragaria vesca HOM05D000002 ORTHO05D000001 4.4e-08 61.6 79 43.0
Sopen02g009840 Solanum pennellii HOM05D000002 ORTHO05D000001 4.4e-08 61.6 84 41.7
Sopen06g007920 Solanum pennellii HOM05D000002 ORTHO05D000001 4.4e-08 61.6 84 41.7
Sopen09g029100 Solanum pennellii HOM05D000002 ORTHO05D000001 4.4e-08 61.6 84 41.7
CSS0027637 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.7e-08 61.2 67 44.8
CSS0048686 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.7e-08 61.2 104 40.4
ECA234G3833 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.5e-08 60.8 72 40.3
Lalb_Chr02g0155271 Lupinus albus HOM05D000002 ORTHO05D000001 7.5e-08 60.8 69 46.4
Sopen12g026370 Solanum pennellii HOM05D000002 ORTHO05D000001 9.8e-08 60.5 84 40.5
ECA248G2341 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-07 60.1 72 34.7
Hma1.2p1_0820F.1_g223995 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.3e-07 60.1 87 42.5
Hma1.2p1_0820F.1_g224020 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.3e-07 60.1 87 42.5
Sopen01g007590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-07 60.1 84 41.7
Cpa.g.sc138.15 Carica papaya HOM05D000002 ORTHO05D000001 2.8e-07 58.9 43 60.5
CSS0046044 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.7e-07 58.5 68 45.6
CSS0003655 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-07 58.2 59 50.8
CSS0017331 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-07 58.2 37 64.9
CSS0037972 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.8e-07 58.2 59 50.8
Sp4g04730 Schrenkiella parvula HOM05D000002 ORTHO05D000001 4.8e-07 58.2 71 43.7
EL10Ac9g20778 Beta vulgaris HOM05D000002 ORTHO05D000001 6.3e-07 57.8 71 40.8
CSS0014778 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.3e-07 57.8 67 41.8
FvH4_4g08211 Fragaria vesca HOM05D000002 ORTHO05D000001 6.3e-07 57.8 101 32.7
RhsimUnG0229000 Rhododendron simsii HOM05D000002 ORTHO05D000001 6.3e-07 57.8 87 39.1
Manes.08G103711 Manihot esculenta HOM05D000002 ORTHO05D000001 8.3e-07 57.4 92 40.2
Nn7g37206 Nelumbo nucifera HOM05D000002 ORTHO05D000001 8.3e-07 57.4 59 52.5
Psat4g115640 Pisum sativum HOM05D000002 ORTHO05D000001 8.3e-07 57.4 42 57.1
ECA238G2859 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-06 56.6 71 38.0
Sopen11g010290 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.6 68 44.1
CAN.G1438.1 Capsicum annuum HOM05D000002 ORTHO05D000001 1.8e-06 56.2 59 50.8
Atru.chr4.75 Acer truncatum HOM05D000002 ORTHO05D000001 2.4e-06 55.8 63 47.6
CSS0000424 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-06 55.8 112 32.1
CSS0015826 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-06 55.8 57 50.9
ECA234G3983 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.4e-06 55.8 72 33.3
FvH4_1g18381 Fragaria vesca HOM05D000002 ORTHO05D000001 9.1e-06 53.9 91 37.4
Manes.13G106550 Manihot esculenta HOM05D000002 ORTHO05D000001 9.1e-06 53.9 59 45.8


User provided reference genes

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