Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 0.0e+00 1131.3 636 100.0
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 3.1e-260 901.7 510 96.3
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 3.6e-232 808.5 646 74.8
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 1.1e-207 727.2 641 66.5
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 7.1e-204 714.5 655 65.8
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 8.4e-197 691.0 647 66.3
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.6e-187 660.2 643 63.5
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 8.7e-186 654.4 643 62.4
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 2.2e-173 613.2 653 62.8
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 4.2e-172 609.0 659 58.9
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 4.5e-158 562.4 330 93.0
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 3.2e-156 556.2 651 56.8
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 2.0e-153 547.0 669 55.2
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 9.7e-153 544.7 636 55.0
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 4.8e-152 542.3 647 55.0
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 8.2e-152 541.6 655 54.8
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 4.1e-151 539.3 664 51.4
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 8.8e-146 521.5 652 53.2
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 1.7e-144 517.3 697 50.1
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 6.3e-144 515.4 654 53.1
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 1.4e-143 514.2 656 56.1
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.9e-142 508.8 644 53.6
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 7.7e-142 508.4 687 50.9
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 1.0e-141 508.1 689 50.4
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 1.9e-140 503.8 669 51.1
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 1.2e-139 501.1 612 54.7
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 3.6e-139 499.6 649 51.8
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 8.0e-139 498.4 660 52.6
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 8.0e-139 498.4 669 52.3
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 2.3e-138 496.9 689 49.5
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 8.8e-138 495.0 646 53.1
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 4.4e-137 492.7 679 51.1
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 4.4e-137 492.7 676 49.9
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.2e-134 484.6 643 49.8
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 3.5e-134 483.0 692 49.3
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 5.9e-134 482.3 695 50.9
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 2.9e-133 479.9 672 50.7
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.9e-133 479.9 647 52.6
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 1.1e-132 478.0 702 48.4
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 2.5e-132 476.9 642 52.3
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 6.1e-131 472.2 664 49.5
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 1.4e-130 471.1 644 51.9
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 8.8e-130 468.4 650 51.4
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 2.0e-129 467.2 648 52.2
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 6.3e-128 462.2 662 48.6
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 1.1e-127 461.5 524 58.6
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 1.4e-127 461.1 648 52.0
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 1.8e-127 460.7 607 49.1
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 4.1e-127 459.5 695 47.5
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 4.5e-126 456.1 696 48.4
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 1.3e-125 454.5 637 49.5
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 7.2e-124 448.7 641 50.7
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 1.6e-123 447.6 620 48.4
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 1.0e-122 444.9 644 51.9
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 1.4e-122 444.5 670 50.0
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.3e-122 443.7 643 49.9
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 5.2e-122 442.6 650 49.1
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 5.2e-122 442.6 652 48.5
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 2.8e-120 436.8 671 47.8
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 3.1e-119 433.3 651 49.3
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 2.0e-118 430.6 641 48.5
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 6.6e-117 425.6 694 46.1
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 1.5e-116 424.5 695 45.5
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 2.5e-116 423.7 719 46.7
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 5.6e-116 422.5 645 48.8
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 6.1e-115 419.1 548 52.7
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 1.5e-113 414.5 673 46.8
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 1.5e-113 414.5 660 48.0
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.0e-113 414.1 636 50.9
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 1.8e-111 407.5 614 46.7
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 1.2e-110 404.8 688 45.1
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 1.2e-110 404.8 685 47.3
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 1.3e-109 401.4 694 44.2
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 1.7e-109 401.0 682 44.7
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 8.6e-109 398.7 692 43.8
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 6.2e-107 392.5 699 45.9
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 1.8e-106 391.0 653 45.6
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 2.3e-106 390.6 662 45.3
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.9e-104 383.6 698 43.3
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.7e-102 377.1 558 47.8
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 3.5e-102 376.7 642 44.5
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 7.8e-102 375.6 603 47.1
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 1.1e-98 365.2 500 49.0
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 3.1e-98 363.6 584 47.3
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 1.2e-97 361.7 670 42.5
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 6.4e-96 355.9 648 46.0
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 1.4e-95 354.8 662 44.0
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 1.3e-93 348.2 567 46.0
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 2.1e-91 340.9 456 50.9
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.8e-91 340.5 634 44.6
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 6.2e-91 339.3 723 40.5
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 4.0e-90 336.7 673 40.6
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.3e-88 331.6 579 47.0
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 2.4e-87 327.4 646 40.9
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 3.5e-86 323.6 673 39.8
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 4.6e-86 323.2 673 39.7
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 6.0e-86 322.8 664 41.0
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.9e-84 317.8 435 50.6
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 2.5e-84 317.4 641 40.7
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 2.5e-84 317.4 570 46.1
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 2.1e-78 297.7 671 39.2
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.3e-77 295.0 423 50.1
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 5.4e-71 273.1 318 58.5
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 2.8e-67 260.8 624 37.0
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 3.1e-66 257.3 637 36.1
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 3.1e-66 257.3 641 40.1
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.9e-66 256.1 453 44.2
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 3.4e-65 253.8 639 37.1
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 3.4e-65 253.8 639 36.9
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 4.2e-63 246.9 643 35.6
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 7.9e-62 242.7 639 35.4
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 3.3e-60 237.3 369 49.1
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 1.5e-57 228.4 180 68.3
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.7e-56 224.9 333 51.4
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 7.4e-52 209.5 551 37.2
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 4.6e-46 190.3 610 32.6
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 4.8e-43 180.3 273 45.4
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 5.9e-41 173.3 630 34.1
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 1.0e-40 172.6 225 57.3
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 3.3e-36 157.5 573 32.1
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 3.1e-34 151.0 640 28.6
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 9.4e-31 139.4 181 49.2
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 1.1e-26 125.9 138 55.8
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 1.2e-25 122.5 314 36.9
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 7.2e-23 113.2 535 28.8
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.2e-19 101.7 128 54.7
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 2.8e-19 101.3 160 43.8
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.1e-18 99.4 106 60.4
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.4e-18 99.0 106 60.4
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.4e-18 98.2 152 45.4
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 2.9e-16 91.3 179 44.1
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 5.0e-16 90.5 133 48.9
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.6e-14 85.5 637 27.3
Nitab4.5_0005621g0100 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.6e-09 68.9 129 44.2


User provided reference genes

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