Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 0.0e+00 2012.7 1308 100.0
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 0.0e+00 1363.2 713 98.7
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 0.0e+00 1157.1 1308 62.6
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 0.0e+00 1105.5 1309 64.7
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 0.0e+00 1078.2 1117 69.6
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.8e-294 1016.5 1444 60.7
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 8.9e-286 987.6 752 71.4
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 8.9e-286 987.6 1429 58.5
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 2.6e-277 959.5 1313 58.7
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 1.1e-270 937.6 1409 57.6
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.4e-270 937.2 1512 55.5
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 8.4e-260 901.4 1252 51.2
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.1e-256 891.0 1333 48.2
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 2.6e-253 879.8 1346 57.4
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.8e-238 830.5 635 69.1
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 2.8e-223 780.0 1323 55.5
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.7e-220 770.8 1359 43.0
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.7e-215 754.2 1376 43.0
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 8.5e-212 741.9 1402 53.4
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 6.1e-210 735.7 1345 52.9
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.1e-203 714.9 1242 55.3
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.6e-202 711.1 1347 51.5
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.6e-202 711.1 1347 51.5
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 1.6e-202 711.1 1246 56.1
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 6.1e-202 709.1 1311 52.8
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.2e-199 700.7 1376 41.5
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 4.1e-198 696.4 1349 40.5
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 9.1e-198 695.3 1342 49.3
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.2e-191 674.1 1353 50.6
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.0e-188 665.2 1342 46.2
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 2.9e-188 663.7 1376 49.4
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 8.6e-188 662.1 1349 40.0
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 8.0e-186 655.6 834 51.0
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.8e-182 644.4 1314 47.3
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 5.0e-180 636.3 1399 38.7
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.2e-175 620.9 1346 40.0
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.2e-162 576.2 813 44.4
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 8.4e-159 565.8 1368 48.3
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 4.1e-158 563.5 1347 49.3
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 3.3e-147 527.3 1343 41.8
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.3e-146 525.4 1363 47.0
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.0e-140 505.8 1341 48.1
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 2.6e-136 491.1 961 52.5
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 6.4e-135 486.5 825 41.1
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.6e-133 481.9 721 42.7
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.6e-130 471.9 1165 34.3
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.8e-130 471.1 817 41.5
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 2.4e-129 468.0 1334 38.2
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 4.5e-128 463.8 818 40.2
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 1.1e-126 459.1 1155 34.1
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 5.5e-126 456.8 802 40.8
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.2e-125 455.7 823 40.6
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 7.4e-123 446.4 1362 35.6
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 9.6e-123 446.0 1352 39.3
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 9.6e-123 446.0 1352 39.5
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 2.4e-121 441.4 1366 39.2
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.2e-120 439.1 1337 36.6
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 3.4e-120 437.6 829 40.2
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 4.2e-118 430.6 1360 33.1
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 3.3e-115 421.0 1400 39.9
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 7.4e-115 419.9 829 38.2
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 2.4e-113 414.8 1348 34.9
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 5.3e-113 413.7 722 40.3
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 2.0e-112 411.8 815 39.8
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 4.5e-112 410.6 1395 38.0
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 4.5e-112 410.6 908 35.5
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.3e-111 409.1 1374 41.1
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.7e-111 408.7 1369 34.4
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 2.9e-111 407.9 1346 38.9
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 3.2e-110 404.4 1361 40.1
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.2e-110 404.4 842 37.5
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 4.2e-110 404.1 721 39.1
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 5.5e-110 403.7 1345 35.7
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.4e-108 399.1 1332 32.1
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 5.7e-107 393.7 1348 39.6
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 1.3e-106 392.5 1352 37.0
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 5.3e-105 387.1 1355 39.4
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.2e-104 386.0 837 36.7
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 1.2e-104 386.0 822 36.6
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 1.5e-104 385.6 820 37.2
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 3.4e-104 384.4 1343 36.2
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 7.7e-104 383.3 820 36.2
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 5.0e-103 380.6 821 35.8
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.9e-102 378.6 828 36.6
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.2e-102 377.9 828 36.6
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 9.4e-102 376.3 1381 31.0
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 2.1e-101 375.2 830 37.0
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.0e-100 372.9 812 36.5
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 5.2e-100 370.5 1339 40.0
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.7e-99 367.1 830 36.3
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 6.3e-98 363.6 822 35.0
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.2e-98 363.2 1352 37.5
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 3.1e-97 361.3 1347 31.0
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.1e-97 360.9 828 36.6
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 4.1e-97 360.9 1393 34.7
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 5.9e-96 357.1 1358 34.2
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.3e-95 355.9 1347 32.3
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 5.0e-95 354.0 1380 39.2
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 1.6e-93 349.0 1344 37.9
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 6.1e-93 347.1 1330 32.9
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.8e-92 345.5 1360 36.6
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.8e-92 345.5 675 37.5
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 4.0e-92 344.4 1381 33.9
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 7.0e-89 333.6 812 33.6
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 1.3e-87 329.3 1356 36.8
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 5.0e-87 327.4 1371 33.2
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.0e-85 320.1 1382 33.6
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.8e-84 316.6 1387 32.4
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 1.5e-83 315.8 871 33.0
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 2.8e-82 311.6 963 44.7
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 6.3e-82 310.5 1261 35.9
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 7.0e-81 307.0 1348 30.4
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 2.0e-80 305.4 843 33.3
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 2.0e-80 305.4 1353 30.2
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.0e-79 303.1 1353 31.2
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 2.9e-79 301.6 818 32.3
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 5.0e-79 300.8 1356 30.6
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 4.7e-77 294.3 1343 32.8
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 4.7e-77 294.3 855 32.5
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 4.4e-75 287.7 821 33.9
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 3.8e-71 274.6 1351 30.1
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 5.0e-71 274.2 1350 30.4
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 5.0e-71 274.2 500 35.8
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 5.0e-71 274.2 1132 35.4
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.9e-70 272.3 886 30.8
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.2e-69 269.6 1351 34.7
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 2.8e-69 268.5 591 36.0
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.5e-67 262.7 850 30.8
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 2.2e-66 258.8 842 31.7
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 4.9e-66 257.7 633 33.8
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 4.9e-66 257.7 653 34.0
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.6e-64 252.7 579 36.1
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 6.6e-63 247.3 700 32.1
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 8.6e-63 246.9 701 32.4
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 1.5e-62 246.1 686 31.6
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 9.5e-62 243.4 703 31.2
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 3.1e-60 238.4 709 31.5
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 4.0e-60 238.0 705 30.2
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 9.2e-57 226.9 340 51.8
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.2e-56 226.5 716 30.9
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 2.7e-56 225.3 1395 33.7
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 1.8e-52 212.6 1392 31.2
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 6.8e-52 210.7 898 28.5
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 3.4e-51 208.4 1188 37.0
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 2.9e-50 205.3 471 33.5
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.4e-49 203.0 386 45.6
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 7.1e-49 200.7 584 32.0
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.6e-48 199.5 1220 30.9
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 2.1e-48 199.1 645 29.6
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.7e-47 196.1 685 29.8
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 2.3e-47 195.7 650 30.6
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 9.5e-46 190.3 611 36.0
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.6e-45 189.5 698 30.9
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.8e-45 188.7 204 54.4
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.8e-45 188.7 204 54.4
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.9e-41 176.0 682 28.2
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.8e-37 162.2 251 47.4
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.4e-36 159.1 1210 30.7
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 6.6e-31 141.0 851 26.9
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.1e-29 136.0 1348 25.4
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 2.6e-19 102.4 772 24.4
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 3.4e-19 102.1 1347 25.0
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 9.9e-19 100.5 627 24.9
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.7e-18 99.8 681 27.2
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 1.8e-12 79.7 289 29.1
unitig_88.g27643 Utricularia gibba HOM05D003962 ORTHO05D004714 1.7e-10 73.2 138 47.1
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 1.9e-09 69.7 163 39.3


User provided reference genes

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