Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 3.5e-219 764.6 378 100.0
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.4e-199 698.7 350 98.6
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.0e-170 603.6 418 74.9
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 1.6e-166 589.7 418 74.2
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 3.8e-165 585.1 417 72.2
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.0e-162 577.0 407 72.7
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 8.9e-162 573.9 413 71.7
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 3.7e-160 568.5 418 70.3
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 1.1e-159 567.0 415 71.8
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 1.4e-159 566.6 419 69.9
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.4e-159 565.8 424 70.3
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 7.0e-159 564.3 415 70.6
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.6e-158 563.1 417 70.3
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 2.0e-158 562.8 420 69.8
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 4.6e-158 561.6 466 65.5
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 7.8e-158 560.8 418 70.1
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 7.8e-158 560.8 423 70.7
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 7.8e-158 560.8 407 71.7
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 5.0e-157 558.1 434 68.4
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 1.5e-156 556.6 419 69.0
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 7.3e-156 554.3 457 65.2
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 1.6e-155 553.1 417 69.5
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 2.1e-155 552.7 418 68.9
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 2.8e-155 552.4 418 68.4
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 3.6e-155 552.0 418 69.1
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 6.2e-155 551.2 418 68.7
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.0e-154 550.4 436 67.2
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 1.4e-154 550.1 399 71.2
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 2.3e-154 549.3 451 65.4
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 3.1e-154 548.9 417 68.6
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 3.1e-154 548.9 417 68.6
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 8.9e-154 547.4 413 68.5
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 3.4e-153 545.4 417 68.6
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 4.4e-153 545.0 419 68.0
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 5.8e-153 544.7 419 67.5
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 5.8e-153 544.7 402 70.6
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 5.8e-153 544.7 418 67.5
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 7.5e-153 544.3 418 66.5
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 9.8e-153 543.9 418 67.2
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 1.3e-152 543.5 417 68.3
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 1.7e-152 543.1 417 66.9
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 3.7e-152 542.0 416 66.6
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 4.9e-152 541.6 401 71.1
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 8.3e-152 540.8 418 68.4
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 8.3e-152 540.8 417 66.9
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 1.1e-151 540.4 418 66.3
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 3.2e-151 538.9 418 67.0
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 3.2e-151 538.9 411 67.9
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 3.2e-151 538.9 418 66.3
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 4.1e-151 538.5 418 67.0
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 4.1e-151 538.5 424 66.7
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 9.2e-151 537.3 417 66.4
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.6e-150 536.6 410 67.6
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 2.0e-150 536.2 411 68.4
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 2.7e-150 535.8 417 67.4
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 7.8e-150 534.3 410 68.0
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 1.3e-149 533.5 404 66.6
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 1.7e-149 533.1 415 66.7
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 1.7e-149 533.1 441 63.9
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 1.7e-149 533.1 409 67.5
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 2.3e-149 532.7 404 66.6
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 3.0e-149 532.3 417 65.9
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 5.0e-149 531.6 417 65.9
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 5.0e-149 531.6 440 63.6
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 6.6e-149 531.2 410 67.8
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 1.5e-148 530.0 419 67.1
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 1.5e-148 530.0 418 65.6
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 1.9e-148 529.6 411 67.2
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.9e-148 529.6 418 65.6
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 1.9e-148 529.6 411 66.7
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 5.6e-148 528.1 404 66.3
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 7.3e-148 527.7 418 66.0
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 1.2e-147 526.9 418 66.3
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.2e-147 526.9 415 65.8
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.1e-146 523.9 413 65.9
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 2.3e-146 522.7 418 65.3
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 6.8e-146 521.2 400 67.0
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 2.0e-145 519.6 379 72.0
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 2.0e-145 519.6 411 64.2
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 2.6e-145 519.2 407 67.6
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 4.4e-145 518.5 411 65.5
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 4.4e-145 518.5 399 66.9
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 5.8e-145 518.1 412 64.6
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 5.8e-145 518.1 401 66.8
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 1.3e-144 516.9 417 65.7
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 1.3e-144 516.9 417 65.7
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 2.9e-144 515.8 384 68.8
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 1.1e-143 513.8 411 63.7
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 2.4e-143 512.7 412 63.3
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 2.4e-143 512.7 412 63.3
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 3.2e-143 512.3 406 64.5
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 4.1e-143 511.9 409 66.7
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 7.1e-143 511.1 406 64.3
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 1.2e-142 510.4 405 64.2
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 7.8e-142 507.7 410 62.9
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 7.8e-142 507.7 412 63.3
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 1.7e-141 506.5 399 65.2
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 1.5e-140 503.4 404 65.1
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 1.9e-140 503.1 411 64.0
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 2.1e-139 499.6 429 60.1
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 4.7e-139 498.4 426 60.8
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 1.1e-138 497.3 453 61.4
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 8.4e-136 487.6 443 58.9
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 5.4e-135 485.0 497 55.1
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 6.0e-134 481.5 390 63.3
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 6.0e-134 481.5 405 62.7
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 6.2e-131 471.5 420 59.3
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 5.2e-130 468.4 357 67.2
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 8.9e-130 467.6 396 62.1
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 9.9e-129 464.2 405 60.0
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 6.4e-128 461.5 350 68.3
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 6.4e-128 461.5 350 69.1
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 4.6e-126 455.3 397 63.0
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 1.0e-125 454.1 383 62.1
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 1.1e-124 450.7 350 67.4
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 5.6e-124 448.4 368 62.8
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 2.1e-123 446.4 412 56.8
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 1.1e-116 424.1 425 52.0
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 2.7e-110 402.9 422 51.9
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 3.5e-110 402.5 402 52.0
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 1.1e-108 397.5 312 66.3
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.8e-106 390.2 405 51.1
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 5.8e-105 385.2 405 50.9
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 9.0e-98 361.3 364 55.2
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 2.1e-94 350.1 364 55.2
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 2.1e-94 350.1 245 71.4
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 7.4e-92 341.7 379 52.8
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 1.4e-90 337.4 207 80.7
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 3.6e-86 322.8 415 42.9
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 3.9e-85 319.3 207 75.8
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 1.5e-81 307.4 204 73.5
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 5.9e-81 305.4 416 43.8
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 6.7e-77 292.0 414 44.0
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 3.3e-76 289.7 458 39.5
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 1.6e-73 280.8 277 56.7
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 7.7e-73 278.5 420 44.3
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.0e-72 278.1 363 48.8
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 4.0e-69 266.2 255 57.6
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 2.6e-60 236.9 454 36.1
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 2.7e-57 226.9 210 57.6
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 3.4e-52 209.9 438 35.4
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 8.3e-51 205.3 354 38.7
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 7.3e-47 192.2 153 62.1
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 9.5e-47 191.8 153 61.4
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 2.1e-46 190.7 230 53.5
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 8.0e-46 188.7 178 60.7
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 4.4e-44 183.0 112 82.1
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 1.0e-40 171.8 175 53.7
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 3.3e-39 166.8 337 36.5
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 9.5e-39 165.2 117 71.8
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 3.7e-35 153.3 239 38.9
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 5.4e-34 149.4 182 47.3
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 1.7e-32 144.4 85 78.8
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 8.3e-27 125.6 266 32.0
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 3.5e-25 120.2 253 33.6
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 8.1e-22 109.0 87 58.6
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 4.0e-21 106.7 66 75.8
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 8.9e-21 105.5 87 57.5
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 4.6e-17 93.2 65 69.2
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 1.3e-16 91.7 75 62.7
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 1.1e-15 88.6 117 44.4
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 2.6e-12 77.4 219 27.9
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 7.6e-12 75.9 47 63.8
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 1.9e-10 71.2 43 74.4
RcHm_v2.0_Chr4g0402621 Rosa chinensis HOM05D004141 ORTHO05D344211 1.7e-08 64.7 39 82.1
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 1.3e-06 58.5 53 58.5
CAN.G472.28 Capsicum annuum HOM05D000783 ORTHO05D000705 3.6e-06 57.0 107 31.8
SMO140G0050 Selaginella moellendorffii HOM05D003484 ORTHO05D004152 3.6e-06 57.0 187 25.7
SGA_v2.0_scaffold1G00349 Striga asiatica HOM05D000783 ORTHO05D000705 4.8e-06 56.6 107 29.9
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 8.1e-06 55.8 53 58.5


User provided reference genes

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