Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1812.7 884 100.0
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1487.6 880 83.4
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1484.9 928 79.1
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1459.1 855 84.7
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1416.0 1006 72.2
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1398.3 883 78.8
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1390.6 889 78.1
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1379.0 888 77.5
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1372.8 881 79.2
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1371.7 885 78.4
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1370.9 924 74.4
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1369.8 883 77.3
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1367.4 885 77.6
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1359.7 884 77.5
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1358.6 887 76.6
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1357.0 872 77.2
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1346.6 850 78.0
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1330.1 885 75.5
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1327.8 883 75.8
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1326.6 858 76.6
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1323.9 858 76.5
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1320.8 883 73.8
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1319.3 858 76.3
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1309.7 884 75.1
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1306.6 885 75.1
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1304.3 883 73.8
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1302.3 881 73.0
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1295.4 879 73.3
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1294.6 858 74.5
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1278.1 864 73.3
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1276.9 881 72.0
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1276.9 868 75.2
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1258.0 894 70.9
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1252.7 906 69.8
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1251.5 890 71.0
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1243.4 867 72.8
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1242.3 879 71.7
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1239.9 857 72.5
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1238.0 884 70.8
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1237.6 894 70.4
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1237.6 894 70.4
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1236.1 887 71.6
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1235.3 854 71.5
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1231.1 793 77.3
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1227.6 877 71.0
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1226.5 850 72.5
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1226.5 892 70.7
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1222.2 892 70.5
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1222.2 841 72.8
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1217.2 877 70.2
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1212.2 892 70.3
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1206.4 882 69.2
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1206.0 950 65.9
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1202.2 851 71.3
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1197.2 872 70.3
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 0.0e+00 1192.2 883 69.0
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1188.7 850 70.7
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1188.3 846 71.7
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1180.6 868 71.1
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1178.3 889 69.3
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1170.2 885 69.3
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 0.0e+00 1169.5 839 71.5
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 0.0e+00 1167.1 811 72.6
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 0.0e+00 1156.7 953 64.8
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1137.9 874 67.0
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 0.0e+00 1134.8 857 67.9
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 0.0e+00 1134.4 860 67.0
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 0.0e+00 1132.1 869 67.2
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 0.0e+00 1118.6 888 66.2
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 0.0e+00 1113.2 870 66.0
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 0.0e+00 1112.8 848 67.5
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1111.3 858 67.1
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 0.0e+00 1109.0 851 66.2
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1099.3 849 66.1
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 6.0e-312 1073.9 866 65.0
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 3.8e-304 1048.1 894 62.6
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 1.4e-295 1019.6 851 62.0
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 5.4e-295 1017.7 850 62.5
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 1.7e-293 1012.7 851 61.5
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 2.3e-293 1012.3 851 61.7
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 9.0e-290 1000.3 850 61.8
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.2e-289 1000.0 859 61.4
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 7.6e-289 997.3 851 61.1
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 8.7e-285 983.8 852 60.9
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 8.7e-285 983.8 852 60.9
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 2.4e-282 975.7 850 60.4
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 3.1e-282 975.3 848 61.3
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 5.3e-282 974.5 849 61.4
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 2.0e-281 972.6 849 61.0
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 1.1e-279 966.8 844 60.7
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 3.9e-277 958.4 851 59.6
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 3.7e-275 951.8 759 64.7
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.7e-267 925.2 859 58.3
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.0e-261 907.1 792 62.6
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 6.1e-254 881.3 790 59.9
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 8.2e-235 817.8 718 60.9
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 1.1e-234 817.4 888 53.2
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.0e-228 796.6 523 77.4
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.0e-212 743.4 397 89.9
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 4.9e-203 712.2 445 79.6
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 9.2e-202 708.0 620 60.8
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.2e-201 707.6 896 47.7
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.6e-198 696.0 907 46.4
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 3.5e-185 652.9 476 72.1
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 1.8e-181 640.6 369 84.6
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 7.8e-177 625.2 412 75.7
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 6.7e-168 595.5 836 44.5
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.8e-160 570.9 395 73.9
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.1e-141 508.4 510 54.3
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.2e-123 447.6 276 78.3
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.2e-110 404.4 282 75.5
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 8.6e-99 365.9 378 52.9
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.9e-94 350.9 555 41.4
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.9e-94 350.9 555 41.4
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 3.1e-88 330.9 282 59.6
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 7.8e-84 316.2 175 86.9
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.3e-82 310.8 369 48.8
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.5e-74 284.6 151 88.7
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 4.3e-74 283.9 865 29.0
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.1e-64 252.7 137 86.9
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 5.3e-64 250.4 145 84.1
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.1e-58 232.6 174 66.1
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 6.0e-52 210.3 117 80.3
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 9.9e-47 193.0 308 37.7
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 1.5e-42 179.1 247 39.3
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 3.8e-38 164.5 185 51.9
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 4.2e-29 134.4 225 36.9
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 3.1e-24 118.2 129 48.8
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 3.4e-23 114.8 91 65.9
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 1.0e-22 113.2 161 38.5
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 7.0e-16 90.5 58 67.2
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.5e-15 89.4 81 56.8
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 4.5e-15 87.8 129 39.5
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 5.9e-15 87.4 221 26.7
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.9e-14 85.1 55 72.7
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.9e-14 85.1 55 72.7
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.9e-14 85.1 55 72.7
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.9e-14 85.1 55 72.7
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.9e-14 85.1 55 72.7
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.9e-14 85.1 55 72.7
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.9e-14 85.1 55 72.7
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.9e-14 85.1 55 72.7
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.9e-14 85.1 55 72.7
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.9e-14 85.1 55 72.7
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.8e-14 84.7 55 72.7
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 1.0e-11 76.6 118 39.0
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 2.6e-10 72.0 74 54.1
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 9.7e-10 70.1 33 87.9
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 1.7e-09 69.3 62 58.1
VMungo1127G0889 Vigna mungo HOM05D005283 ORTHO05D006769 6.3e-09 67.4 61 57.4


User provided reference genes

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