Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.1e-61 238.8 120 100.0
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 9.7e-38 160.2 169 57.4
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 5.5e-33 144.4 155 54.2
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 9.4e-33 143.7 139 58.3
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.5e-30 136.3 154 52.6
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.0e-30 136.0 143 53.8
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 4.4e-30 134.8 154 50.0
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 4.4e-30 134.8 154 50.0
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 5.7e-30 134.4 154 50.0
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 7.4e-30 134.0 145 50.3
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 9.7e-30 133.7 132 56.8
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 1.3e-29 133.3 154 50.0
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 1.7e-29 132.9 154 49.4
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 2.8e-29 132.1 145 50.3
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 4.8e-29 131.3 146 51.4
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 4.8e-29 131.3 150 50.0
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 4.8e-29 131.3 132 56.1
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 6.3e-29 131.0 154 49.4
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 6.3e-29 131.0 154 50.0
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 6.3e-29 131.0 154 50.0
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 6.3e-29 131.0 153 49.7
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 6.3e-29 131.0 153 49.7
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 8.2e-29 130.6 145 50.3
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 1.1e-28 130.2 153 48.4
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 1.8e-28 129.4 153 49.7
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 2.4e-28 129.0 154 48.7
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 4.1e-28 128.3 132 55.3
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 4.1e-28 128.3 131 54.2
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 4.1e-28 128.3 156 48.1
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 5.3e-28 127.9 151 51.0
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 7.0e-28 127.5 145 47.6
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 7.0e-28 127.5 131 54.2
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 7.0e-28 127.5 145 48.3
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 9.1e-28 127.1 153 47.1
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 9.1e-28 127.1 131 54.2
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 9.1e-28 127.1 145 48.3
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 9.1e-28 127.1 153 47.7
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.2e-27 126.7 154 48.1
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.2e-27 126.7 154 48.1
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.2e-27 126.7 154 48.1
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 1.2e-27 126.7 154 48.1
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.6e-27 126.3 152 45.4
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 1.6e-27 126.3 154 47.4
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 2.0e-27 125.9 145 48.3
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 2.0e-27 125.9 153 47.7
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.0e-27 125.9 155 48.4
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 2.0e-27 125.9 153 47.7
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 3.5e-27 125.2 154 48.1
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 3.5e-27 125.2 154 48.1
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 3.5e-27 125.2 154 48.1
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 3.5e-27 125.2 153 47.7
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.5e-27 125.2 154 47.4
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 3.5e-27 125.2 153 47.7
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 4.5e-27 124.8 156 47.4
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 5.9e-27 124.4 131 51.1
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 7.7e-27 124.0 154 48.1
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 7.7e-27 124.0 154 48.1
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 7.7e-27 124.0 136 50.0
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 7.7e-27 124.0 155 47.1
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 7.7e-27 124.0 154 46.1
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 7.7e-27 124.0 138 52.9
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 1.0e-26 123.6 154 46.8
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.0e-26 123.6 131 51.9
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.0e-26 123.6 156 45.5
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.0e-26 123.6 154 46.1
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.3e-26 123.2 136 50.0
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.3e-26 123.2 136 50.0
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-26 123.2 154 47.4
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.2e-26 122.5 142 50.7
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 2.2e-26 122.5 154 48.1
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.9e-26 122.1 145 46.9
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 3.8e-26 121.7 152 44.7
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 3.8e-26 121.7 136 49.3
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 3.8e-26 121.7 155 45.8
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 5.0e-26 121.3 117 54.7
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 5.0e-26 121.3 152 46.7
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 8.5e-26 120.6 154 44.8
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 8.5e-26 120.6 149 47.7
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 8.5e-26 120.6 161 42.9
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 8.5e-26 120.6 154 47.4
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 1.1e-25 120.2 136 49.3
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.1e-25 120.2 158 44.9
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.1e-25 120.2 153 46.4
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 1.5e-25 119.8 131 50.4
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.5e-25 119.8 131 51.9
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.5e-25 119.8 136 49.3
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.9e-25 119.4 154 46.1
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 2.5e-25 119.0 152 46.7
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.5e-25 119.0 151 46.4
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.5e-25 119.0 152 46.7
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 3.2e-25 118.6 155 45.2
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 3.2e-25 118.6 155 44.5
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 3.2e-25 118.6 154 45.5
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 4.2e-25 118.2 155 45.2
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 4.2e-25 118.2 177 43.5
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 4.2e-25 118.2 154 44.8
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 4.2e-25 118.2 131 51.1
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 7.2e-25 117.5 161 41.6
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 7.2e-25 117.5 131 51.1
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 9.4e-25 117.1 131 51.1
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 9.4e-25 117.1 131 51.1
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.2e-24 116.7 131 49.6
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.2e-24 116.7 131 49.6
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.2e-24 116.7 131 50.4
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 1.2e-24 116.7 153 45.8
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.1e-24 115.9 131 48.9
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.7e-24 115.5 156 42.9
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 3.6e-24 115.2 154 44.2
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 3.6e-24 115.2 136 47.8
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 6.1e-24 114.4 154 44.8
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 1.8e-23 112.8 131 51.1
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 4.0e-23 111.7 154 40.9
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 4.0e-23 111.7 145 42.1
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 6.7e-23 110.9 153 43.8
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 3.3e-22 108.6 131 46.6
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.3e-21 106.7 154 41.6
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 6.3e-21 104.4 131 47.3
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 1.8e-20 102.8 87 60.9
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 1.6e-19 99.8 76 61.8
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 2.0e-19 99.4 130 46.2
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 2.7e-19 99.0 132 41.7
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 2.9e-18 95.5 84 57.1
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 8.5e-18 94.0 139 42.4
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 8.5e-18 94.0 89 55.1
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 1.1e-17 93.6 67 67.2
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.2e-16 90.1 110 48.2
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 2.7e-16 89.0 67 64.2
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 8.0e-16 87.4 145 35.2
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 4.4e-14 81.6 109 45.0
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 4.4e-14 81.6 109 46.8
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 2.2e-13 79.3 101 46.5
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 4.8e-13 78.2 105 46.7
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 5.9e-11 71.2 132 34.1
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 7.7e-11 70.9 67 55.2
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 2.9e-10 68.9 79 50.6
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 7.2e-09 64.3 41 78.0
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 1.6e-08 63.2 171 31.6
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 3.4e-06 55.5 27 85.2


User provided reference genes

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