Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1352.4 700 100.0
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1330.1 713 96.9
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1317.8 713 96.1
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1288.9 699 95.9
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1253.0 729 90.1
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1235.3 708 89.8
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1215.7 715 87.4
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1202.6 706 86.7
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1201.8 715 85.7
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1200.3 710 86.2
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1198.0 714 85.9
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1198.0 704 87.1
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1196.8 720 86.2
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1196.8 705 86.4
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1196.4 705 87.2
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1193.3 704 86.1
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1192.6 715 85.5
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1192.2 705 86.8
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1191.0 705 85.5
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1189.9 704 86.4
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1189.5 706 86.1
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1186.0 704 85.5
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1185.6 705 86.8
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1184.9 706 85.6
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1180.6 714 84.6
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1179.5 705 85.4
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1179.5 714 84.6
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1179.1 704 85.5
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1178.7 700 85.0
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1178.7 715 84.9
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1177.9 707 84.2
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1177.2 704 84.9
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1176.8 703 84.2
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1176.4 704 84.4
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1176.0 709 85.9
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1176.0 706 84.6
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1174.1 716 86.3
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1171.0 707 84.0
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1170.6 700 84.4
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1166.4 701 84.6
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1165.2 732 82.4
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1165.2 701 85.4
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1163.3 692 85.8
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1162.1 713 82.9
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1161.0 696 84.2
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1157.9 705 84.5
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1156.7 719 85.1
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1153.7 704 83.5
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1151.3 705 83.7
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1148.3 701 83.6
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1146.3 693 84.3
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1142.9 701 83.0
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1138.6 688 84.3
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1135.6 680 87.1
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1134.0 710 82.5
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1129.4 703 83.4
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1129.4 703 83.4
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1127.5 693 83.0
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1118.2 706 80.6
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1116.3 709 78.7
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1113.6 709 78.7
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1111.3 727 82.1
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1104.7 709 78.0
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1102.4 700 82.0
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1099.0 708 78.2
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1096.6 704 79.8
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1090.1 701 79.5
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1089.7 701 79.3
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1089.3 702 79.1
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1088.6 701 79.3
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1088.2 702 79.3
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1088.2 713 79.2
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1087.0 701 79.3
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1087.0 701 79.3
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1083.9 701 79.2
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1080.9 725 79.2
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1078.5 698 79.1
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1078.2 702 80.9
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1076.2 701 78.2
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1075.5 699 77.7
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 9.6e-312 1073.2 702 77.8
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 2.1e-310 1068.5 698 78.1
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 4.7e-310 1067.4 655 83.7
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 6.2e-310 1067.0 698 77.9
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 2.6e-308 1061.6 698 77.7
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 2.6e-308 1061.6 698 77.7
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 2.6e-308 1061.6 698 77.7
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 4.1e-306 1054.3 618 86.4
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 2.7e-305 1051.6 704 76.7
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.7e-305 1051.6 693 77.6
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.4e-301 1039.3 695 79.1
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 1.8e-301 1038.9 619 85.6
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 9.9e-300 1033.1 717 77.8
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 8.4e-299 1030.0 685 80.0
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.4e-298 1029.2 690 76.7
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 2.7e-297 1025.0 702 75.2
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 3.0e-296 1021.5 693 75.8
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 6.6e-296 1020.4 659 79.7
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 3.3e-295 1018.1 655 79.1
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.3e-294 1016.1 686 75.5
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 2.6e-292 1008.4 704 73.4
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 6.6e-288 993.8 704 72.3
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.4e-285 986.1 714 73.2
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 3.2e-282 974.9 583 85.8
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 7.4e-279 963.8 648 75.8
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.3e-278 963.0 694 72.0
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.0e-276 955.7 569 86.6
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 4.6e-273 944.5 541 89.3
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 1.8e-269 932.6 685 74.0
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 7.2e-266 920.6 737 70.0
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.6e-244 849.0 705 65.0
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.7e-235 819.7 567 74.4
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 6.5e-235 817.8 537 78.4
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.5e-234 815.8 522 78.9
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.2e-233 813.5 450 92.2
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.7e-214 748.8 557 75.0
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 2.4e-205 719.5 680 55.9
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 1.2e-199 700.7 620 63.1
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 8.6e-195 684.5 402 87.6
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.1e-194 684.1 392 89.3
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.0e-191 673.3 632 54.9
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.4e-173 614.0 399 83.7
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.2e-172 610.9 638 50.3
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 2.7e-172 609.8 517 65.6
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 7.9e-164 581.6 665 47.7
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 6.7e-163 578.6 639 47.9
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 8.2e-137 491.9 635 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.1e-136 490.0 630 43.2
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 3.8e-134 483.0 711 44.2
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.0e-131 473.4 643 42.3
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.4e-128 464.5 623 43.0
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.7e-121 441.0 306 72.2
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.5e-109 399.4 399 53.9
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.0e-107 393.3 399 60.7
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 6.8e-107 392.5 250 81.2
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.4e-82 310.5 225 65.8
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 9.9e-74 282.3 224 69.2
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.0e-62 244.2 171 78.9
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.4e-58 230.7 130 86.9
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 6.0e-39 166.8 138 56.5
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.5e-33 146.7 78 92.3
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 2.5e-29 134.8 101 66.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 5.0e-25 120.6 63 85.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.7e-23 114.8 59 88.1
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 6.1e-23 113.6 61 90.2
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 5.1e-22 110.5 92 60.9
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 2.6e-21 108.2 67 82.1
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 7.4e-21 106.7 64 82.8
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 8.2e-20 103.2 61 85.2
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 5.3e-19 100.5 61 83.6
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 8.5e-17 93.2 56 78.6
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.3e-06 58.5 30 76.7


User provided reference genes

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