Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.4e-198 695.3 345 100.0
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 7.8e-181 637.1 350 91.4
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 6.8e-169 597.4 405 78.0
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 6.8e-169 597.4 405 78.0
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 7.1e-142 507.7 409 65.5
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 3.8e-135 485.3 405 63.5
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 6.5e-135 484.6 405 63.5
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 8.4e-135 484.2 405 63.5
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 2.5e-134 482.6 405 65.4
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 5.1e-132 474.9 406 63.1
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 2.8e-130 469.2 397 59.9
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 4.8e-130 468.4 403 62.0
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 2.0e-128 463.0 405 61.2
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 2.6e-128 462.6 403 62.3
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 3.4e-128 462.2 405 61.5
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 2.1e-125 453.0 404 58.4
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 2.7e-125 452.6 405 60.5
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 3.6e-125 452.2 406 59.4
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 4.6e-125 451.8 406 59.1
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 7.9e-125 451.1 419 59.4
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 7.9e-125 451.1 406 58.6
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.8e-124 449.9 406 58.9
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 3.0e-124 449.1 414 61.4
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 3.9e-124 448.7 403 61.5
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 1.5e-123 446.8 406 57.9
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 1.9e-123 446.4 405 59.5
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 9.7e-123 444.1 406 58.6
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.3e-122 443.7 403 60.3
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 8.2e-122 441.0 406 56.9
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 1.4e-121 440.3 406 56.7
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.8e-121 439.9 404 58.4
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 2.4e-121 439.5 411 56.9
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 4.1e-121 438.7 406 57.9
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 9.1e-121 437.6 406 56.9
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 2.6e-120 436.0 404 57.4
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 7.7e-120 434.5 411 56.7
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.3e-119 433.7 406 57.1
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 6.5e-119 431.4 410 56.8
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.1e-118 430.6 407 56.5
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 4.2e-118 428.7 406 55.9
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 5.5e-118 428.3 406 55.4
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 2.1e-117 426.4 406 55.2
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 6.1e-117 424.9 406 55.4
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 7.9e-117 424.5 407 55.5
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 7.9e-117 424.5 405 56.5
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 1.0e-116 424.1 407 55.0
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.4e-116 423.7 406 55.9
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.8e-116 423.3 406 56.9
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 1.8e-116 423.3 402 56.2
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 2.3e-116 422.9 403 55.8
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 3.9e-116 422.2 407 57.5
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 8.8e-116 421.0 405 57.0
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 8.8e-116 421.0 404 55.9
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 2.6e-115 419.5 406 54.9
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 3.3e-115 419.1 405 56.5
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 2.2e-114 416.4 406 54.7
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 2.2e-114 416.4 406 56.9
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 2.8e-114 416.0 406 56.2
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 3.7e-114 415.6 406 54.7
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 4.8e-114 415.2 404 55.9
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 8.2e-114 414.5 407 54.5
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.1e-113 414.1 406 54.4
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.1e-113 414.1 404 54.5
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 1.4e-113 413.7 405 54.1
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 2.4e-113 412.9 406 54.7
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 2.4e-113 412.9 406 54.4
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 5.3e-113 411.8 403 55.6
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 9.1e-113 411.0 404 55.9
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 9.1e-113 411.0 408 54.4
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 1.5e-112 410.2 439 52.4
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 3.4e-112 409.1 408 54.2
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 4.5e-112 408.7 385 57.9
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 1.0e-111 407.5 406 53.4
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 8.5e-111 404.4 446 52.0
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 8.5e-111 404.4 404 54.0
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 1.1e-110 404.1 404 54.2
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 1.4e-110 403.7 404 53.2
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.9e-110 403.3 406 53.2
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 2.5e-110 402.9 441 50.6
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.5e-110 402.9 404 54.5
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 5.5e-110 401.7 406 53.9
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 9.4e-110 401.0 406 53.0
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 1.6e-109 400.2 410 53.2
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 3.6e-109 399.1 403 54.3
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 6.1e-109 398.3 410 52.9
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 7.9e-109 397.9 404 54.2
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.1e-105 387.5 422 50.2
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 1.4e-105 387.1 314 67.2
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 1.8e-105 386.7 417 53.0
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.8e-105 386.7 359 58.5
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.2e-104 384.0 403 52.9
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 1.2e-104 384.0 404 53.7
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.0e-103 380.9 475 47.6
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 8.5e-103 377.9 382 55.0
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.1e-102 377.5 403 51.1
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 2.2e-98 363.2 406 48.5
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 9.1e-97 357.8 363 53.7
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 2.0e-96 356.7 402 48.8
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 1.0e-95 354.4 405 46.7
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 1.3e-95 354.0 400 49.5
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.8e-95 352.4 375 51.7
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 7.2e-94 348.2 367 53.7
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 1.5e-86 323.9 315 54.3
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 6.8e-84 315.1 353 49.3
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 9.2e-81 304.7 405 44.2
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.5e-78 296.6 415 42.9
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.5e-78 296.6 415 42.9
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.5e-78 296.6 415 42.9
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 6.8e-76 288.5 374 46.3
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 4.9e-74 282.3 411 41.1
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 1.2e-72 277.7 262 52.3
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.6e-69 267.3 354 46.0
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 2.6e-67 260.0 251 52.6
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.9e-66 256.5 249 50.6
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.2e-65 253.1 130 93.8
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.9e-58 229.9 248 48.4
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 1.4e-57 227.6 266 50.0
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 8.1e-53 211.8 214 50.0
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 9.9e-43 178.3 260 37.7
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 4.6e-40 169.5 94 84.0
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 6.6e-39 165.6 363 33.1
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 1.5e-38 164.5 235 44.7
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 5.4e-33 146.0 277 33.9
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 4.9e-26 122.9 94 64.9
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 6.7e-23 112.5 66 77.3
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.7e-18 97.8 164 39.6
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.9e-18 97.1 288 28.1
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 2.9e-18 97.1 95 54.7
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 2.7e-16 90.5 58 67.2
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 1.8e-15 87.8 64 64.1
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 3.3e-14 83.6 111 45.9
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 3.3e-14 83.6 64 64.1
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 6.9e-12 75.9 52 67.3
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 5.0e-10 69.7 76 47.4
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 2.7e-08 63.9 44 63.6
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 2.7e-08 63.9 52 57.7
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.4e-07 61.6 40 62.5
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 3.9e-07 60.1 34 76.5
Lsat_1_v5_gn_4_100620 Lactuca sativa HOM05D001733 ORTHO05D001882 1.1e-06 58.5 37 70.3
Potri.010G096301 Populus trichocarpa HOM05D005422 ORTHO05D006578 9.7e-06 55.5 43 62.8


User provided reference genes

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