Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.7e-42 175.6 91 100.0
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.1e-41 172.9 91 97.8
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 6.7e-39 163.7 91 89.0
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 6.7e-39 163.7 91 91.2
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.1e-38 162.9 91 90.1
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 1.5e-38 162.5 89 91.0
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 2.5e-38 161.8 89 91.0
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 5.6e-38 160.6 91 85.7
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 7.4e-38 160.2 91 87.9
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 9.6e-38 159.8 91 89.0
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 1.3e-37 159.5 91 89.0
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 1.6e-37 159.1 91 87.9
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 2.8e-37 158.3 91 86.8
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 2.8e-37 158.3 89 87.6
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 3.7e-37 157.9 91 86.8
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 3.7e-37 157.9 91 87.9
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 3.7e-37 157.9 91 87.9
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 1.4e-36 156.0 90 86.7
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 1.4e-36 156.0 90 86.7
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 2.4e-36 155.2 85 90.6
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 2.4e-36 155.2 91 83.5
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 2.4e-36 155.2 91 83.5
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 3.1e-36 154.8 91 82.4
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 4.0e-36 154.5 89 86.5
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 4.0e-36 154.5 91 84.6
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 4.0e-36 154.5 85 89.4
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 4.0e-36 154.5 91 83.5
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 5.3e-36 154.1 90 84.4
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 6.9e-36 153.7 91 85.7
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 1.2e-35 152.9 91 83.5
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 1.5e-35 152.5 89 86.5
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 1.5e-35 152.5 91 84.6
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 2.6e-35 151.8 91 82.4
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 3.4e-35 151.4 91 83.5
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 3.4e-35 151.4 91 84.6
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 3.4e-35 151.4 90 83.3
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 3.4e-35 151.4 90 83.3
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 4.5e-35 151.0 91 79.1
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 1.3e-34 149.4 91 80.2
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 2.2e-34 148.7 91 82.4
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 2.2e-34 148.7 91 81.3
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 2.2e-34 148.7 91 81.3
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 2.2e-34 148.7 91 81.3
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 6.4e-34 147.1 91 79.1
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 6.4e-34 147.1 88 79.5
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 8.4e-34 146.7 89 79.8
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 1.4e-33 146.0 90 81.1
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 1.9e-33 145.6 88 78.4
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 2.4e-33 145.2 91 79.1
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 2.4e-33 145.2 92 80.4
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 3.2e-33 144.8 91 81.3
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 3.2e-33 144.8 91 81.3
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 4.2e-33 144.4 86 82.6
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 5.5e-33 144.1 86 81.4
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 9.3e-33 143.3 91 80.2
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 1.6e-32 142.5 91 76.9
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 6.0e-32 140.6 89 78.7
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 7.9e-32 140.2 86 76.7
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 1.0e-31 139.8 82 85.4
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 1.3e-31 139.4 86 80.2
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 1.3e-31 139.4 86 80.2
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 1.8e-31 139.0 86 80.2
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 1.5e-30 136.0 90 75.6
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 1.5e-30 136.0 90 75.6
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 4.3e-30 134.4 86 75.6
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 7.4e-30 133.7 89 74.2
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 7.4e-30 133.7 86 77.9
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 9.6e-30 133.3 82 80.5
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 1.3e-29 132.9 90 73.3
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 2.1e-29 132.1 86 73.3
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 3.7e-29 131.3 90 72.2
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 8.2e-29 130.2 83 78.3
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 1.1e-28 129.8 85 75.3
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 1.1e-28 129.8 86 70.9
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 3.1e-28 128.3 73 86.3
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 3.1e-28 128.3 88 70.5
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 4.0e-28 127.9 87 70.1
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 6.9e-28 127.1 82 76.8
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 9.0e-28 126.7 83 77.1
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 9.0e-28 126.7 83 75.9
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 1.2e-27 126.3 88 69.3
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 1.5e-27 125.9 89 71.9
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 2.6e-27 125.2 83 73.5
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 4.5e-27 124.4 81 72.8
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 7.6e-27 123.6 83 72.3
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 1.0e-26 123.2 89 69.7
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 1.4e-25 119.4 88 68.2
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 1.9e-25 119.0 71 81.7
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 7.1e-25 117.1 83 67.5
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 9.3e-25 116.7 89 69.7
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 6.0e-24 114.0 83 66.3
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 7.9e-24 113.6 85 64.7
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.0e-23 113.2 91 68.1
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 6.7e-23 110.5 84 65.5
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 8.7e-23 110.2 84 65.5
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 1.9e-22 109.0 84 64.3
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 1.6e-21 105.9 82 64.6
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 1.6e-21 105.9 65 78.5
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 1.6e-21 105.9 82 63.4
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 2.8e-21 105.1 82 62.2
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 4.8e-21 104.4 82 61.0
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 4.8e-21 104.4 82 61.0
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 4.8e-21 104.4 82 61.0
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 4.8e-21 104.4 82 61.0
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 6.3e-21 104.0 79 63.3
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 1.1e-20 103.2 86 59.3
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 1.8e-20 102.4 82 59.8
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 1.8e-20 102.4 60 83.3
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 3.1e-20 101.7 82 59.8
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 3.1e-20 101.7 82 59.8
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 6.9e-20 100.5 87 56.3
Sed0027346 Sechium edule HOM05D006477 ORTHO05D008311 3.2e-17 91.7 51 86.3
Psat0s466g0120 Pisum sativum HOM05D006477 ORTHO05D008311 2.3e-15 85.5 89 53.9
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 3.0e-15 85.1 68 64.7
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 3.0e-15 85.1 81 60.5
MBI16_g31701_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 5.1e-15 84.3 60 73.3
BcaC08g46243 Brassica carinata HOM05D006477 ORTHO05D008311 1.5e-14 82.8 82 52.4
Psat7g168960 Pisum sativum HOM05D006477 ORTHO05D008311 1.5e-14 82.8 60 70.0
SGA_v2.0_scaffold195G40833 Striga asiatica HOM05D006477 ORTHO05D404429 7.4e-14 80.5 60 68.3
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 9.7e-14 80.1 49 77.6
BcaB03g15190 Brassica carinata HOM05D006477 ORTHO05D008311 1.7e-13 79.3 83 54.2
arahy.Tifrunner.gnm1.ann1.HM6XW1 Arachis hypogaea HOM05D006477 ORTHO05D008311 3.1e-12 75.1 70 57.1
PSO017G6472 Papaver somniferum HOM05D006477 ORTHO05D008311 8.5e-10 67.0 48 68.8
PSO017G6604 Papaver somniferum HOM05D006477 ORTHO05D008311 8.5e-10 67.0 48 68.8


User provided reference genes

Program Settings