Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.6e-230 802.4 405 100.0
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.4e-202 706.8 379 95.3
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.7e-195 686.0 368 95.1
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.4e-191 671.4 367 93.5
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.0e-179 633.6 379 87.9
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.0e-171 604.7 383 84.6
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.3e-150 534.3 413 72.9
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.6e-146 521.5 386 74.6
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.3e-142 510.4 413 67.3
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 3.3e-138 495.7 416 65.1
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 4.9e-134 481.9 413 63.2
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.1e-133 480.7 413 64.6
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.0e-131 474.2 386 70.2
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.3e-131 473.8 409 62.6
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.7e-131 473.4 412 62.1
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 3.9e-131 472.2 412 61.9
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.3e-129 467.2 411 61.6
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 3.6e-129 465.7 416 60.1
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 4.8e-129 465.3 411 60.8
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 1.5e-127 460.3 350 71.1
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.5e-127 460.3 350 71.1
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 4.5e-127 458.8 408 61.8
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-126 457.2 372 70.2
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 2.2e-126 456.4 509 52.7
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.4e-125 453.8 413 59.3
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 1.2e-124 450.7 416 59.4
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 2.7e-124 449.5 413 59.8
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 4.6e-124 448.7 413 60.3
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 3.0e-123 446.0 412 59.0
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 3.9e-123 445.7 413 59.6
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 2.1e-121 439.9 420 58.6
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 6.2e-121 438.3 412 58.3
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 6.2e-121 438.3 412 58.3
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.8e-120 436.8 322 72.0
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.2e-119 434.1 411 58.9
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.5e-119 433.7 411 56.9
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 1.6e-116 423.7 412 56.3
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 2.7e-116 422.9 402 57.2
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.5e-116 422.5 412 56.1
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 6.0e-116 421.8 407 55.0
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 6.0e-116 421.8 415 54.9
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 6.0e-116 421.8 411 57.7
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 7.9e-116 421.4 413 56.7
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.0e-115 421.0 411 57.9
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.8e-115 420.2 413 56.4
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.8e-115 420.2 413 55.4
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 6.7e-115 418.3 407 54.1
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 4.3e-114 415.6 407 53.6
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 9.6e-114 414.5 409 54.3
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 2.8e-113 412.9 411 55.5
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 8.2e-113 411.4 411 56.4
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.4e-112 410.6 415 53.5
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 2.4e-112 409.8 373 60.1
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 5.3e-112 408.7 412 54.4
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.5e-111 407.1 408 53.7
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 2.0e-111 406.8 413 53.8
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 2.6e-111 406.4 413 54.0
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 3.4e-111 406.0 407 52.3
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 3.4e-111 406.0 411 54.5
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 3.4e-111 406.0 410 54.1
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 4.5e-111 405.6 413 54.5
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 1.0e-110 404.4 410 53.9
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 1.7e-110 403.7 412 54.9
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.7e-110 403.7 413 54.2
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.9e-110 402.9 427 52.9
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 8.4e-110 401.4 413 55.0
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 2.5e-109 399.8 412 53.2
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 3.2e-109 399.4 416 54.6
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.2e-109 399.4 453 50.3
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 5.5e-109 398.7 376 56.6
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 9.3e-109 397.9 412 55.1
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.2e-108 397.5 412 54.9
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.2e-108 397.5 409 53.8
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 5.1e-107 392.1 414 53.4
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 6.7e-107 391.7 414 51.7
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 6.7e-107 391.7 411 53.0
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 1.1e-106 391.0 413 53.0
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 5.7e-106 388.7 413 52.8
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 2.2e-105 386.7 416 53.1
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 6.3e-105 385.2 412 52.2
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 8.2e-105 384.8 413 51.3
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 2.4e-104 383.3 412 52.4
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 5.3e-104 382.1 416 51.9
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.5e-103 380.6 412 52.4
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 2.0e-103 380.2 412 51.5
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 1.7e-102 377.1 373 55.2
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 5.0e-102 375.6 412 51.0
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 5.0e-102 375.6 423 50.6
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 3.2e-101 372.9 411 51.3
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 5.5e-101 372.1 420 51.2
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 5.5e-101 372.1 374 54.8
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.5e-101 372.1 420 51.0
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.1e-100 370.2 411 49.9
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 2.7e-100 369.8 414 49.0
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.6e-100 369.4 414 51.4
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 4.6e-100 369.0 414 49.0
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 4.6e-100 369.0 414 49.3
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 7.9e-100 368.2 416 51.0
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 2.3e-99 366.7 413 51.1
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 3.3e-98 362.8 420 49.8
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 8.5e-94 348.2 448 46.0
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.4e-93 347.4 272 66.5
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 1.9e-93 347.1 413 48.9
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 5.5e-93 345.5 448 45.8
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 6.1e-92 342.0 420 48.8
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.4e-88 330.9 430 47.2
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 4.1e-88 329.3 374 49.7
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 4.5e-87 325.9 380 49.2
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 6.5e-86 322.0 404 47.8
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.9e-85 320.5 367 47.4
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 1.9e-85 320.5 371 47.2
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 9.4e-85 318.2 279 59.9
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.7e-84 316.6 421 43.7
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 2.6e-82 310.1 366 46.2
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 3.7e-81 306.2 325 49.8
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 3.1e-80 303.1 417 44.6
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 1.5e-77 294.3 338 50.3
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 3.2e-69 266.5 243 57.6
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.3e-62 244.6 232 57.8
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.5e-61 241.1 235 54.5
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.6e-60 237.7 244 56.1
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 1.5e-58 231.1 258 51.2
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.4e-50 203.4 234 49.1
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 3.0e-46 190.3 206 52.4
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 4.3e-45 186.4 238 45.4
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 4.7e-44 183.0 412 33.0
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 9.2e-40 168.7 345 31.6
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 4.7e-36 156.4 358 29.6
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.8e-35 154.5 135 64.4
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.2e-35 152.9 116 67.2
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 4.0e-27 126.7 89 70.8
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 6.8e-27 125.9 159 44.0
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.6e-26 124.0 226 30.1
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 4.9e-25 119.8 356 26.1
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.3e-22 111.7 148 45.9
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.9e-21 107.8 141 42.6
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 2.0e-18 97.8 275 25.8
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.3e-12 78.6 107 41.1
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 7.6e-10 69.3 102 41.2
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.1e-08 65.5 43 67.4
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.1e-08 65.5 43 67.4
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 4.2e-08 63.5 55 54.5
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 2.7e-07 60.8 85 38.8
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.7e-07 60.8 96 35.4
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 7.9e-07 59.3 37 75.7
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.0e-06 58.9 74 47.3
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 1.3e-06 58.5 93 39.8


User provided reference genes

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