Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 1.2e-144 516.5 271 100.0
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.3e-53 214.2 247 53.8
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 6.3e-53 211.8 257 51.8
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 2.5e-49 199.9 253 50.2
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 4.3e-49 199.1 248 51.6
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 4.7e-48 195.7 260 49.6
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.4e-44 183.3 254 48.4
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 7.0e-44 181.8 248 46.8
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.2e-43 181.0 259 45.6
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 6.0e-43 178.7 254 48.0
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 3.9e-42 176.0 241 45.6
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 3.9e-42 176.0 251 46.6
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 5.0e-42 175.6 253 43.9
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.1e-41 174.5 251 46.2
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 5.6e-41 172.2 259 45.2
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 9.5e-41 171.4 249 44.6
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.8e-40 169.9 255 44.7
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 8.0e-40 168.3 249 47.8
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 2.3e-39 166.8 251 42.6
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 5.2e-39 165.6 254 44.1
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 2.0e-38 163.7 255 44.3
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 2.0e-38 163.7 256 44.9
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 2.6e-38 163.3 262 45.4
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 2.6e-38 163.3 268 43.7
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 3.4e-38 162.9 246 42.7
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 4.4e-38 162.5 256 42.2
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 4.4e-38 162.5 246 43.1
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 7.5e-38 161.8 246 44.7
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 7.5e-38 161.8 267 41.9
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 7.5e-38 161.8 269 42.8
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 7.5e-38 161.8 248 42.3
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 9.8e-38 161.4 267 41.9
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 2.2e-37 160.2 246 43.9
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 2.9e-37 159.8 248 42.3
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 3.7e-37 159.5 269 42.4
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 6.4e-37 158.7 256 43.0
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 6.4e-37 158.7 258 43.8
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 8.3e-37 158.3 252 41.3
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 8.3e-37 158.3 236 45.3
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.1e-36 157.9 257 42.8
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 1.9e-36 157.1 268 40.3
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 3.2e-36 156.4 256 42.6
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 3.2e-36 156.4 255 41.2
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 7.0e-36 155.2 248 41.9
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 9.2e-36 154.8 267 41.6
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 9.2e-36 154.8 262 42.0
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 9.2e-36 154.8 252 42.1
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.2e-35 154.5 246 41.9
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 1.2e-35 154.5 267 38.6
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 2.1e-35 153.7 224 46.0
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 2.7e-35 153.3 255 41.2
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.7e-34 150.6 245 42.9
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 1.7e-34 150.6 245 42.4
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 3.0e-34 149.8 257 42.0
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 3.9e-34 149.4 246 44.7
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 3.9e-34 149.4 252 42.9
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 5.1e-34 149.1 249 42.2
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.9e-33 147.1 241 42.7
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 3.3e-33 146.4 241 42.7
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 4.3e-33 146.0 238 44.1
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 5.6e-33 145.6 257 40.5
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 5.6e-33 145.6 241 42.7
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 9.5e-33 144.8 249 41.0
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 1.1e-31 141.4 245 42.4
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 5.2e-31 139.0 236 41.5
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 6.8e-31 138.7 269 37.5
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 6.8e-31 138.7 258 37.6
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 3.4e-30 136.3 231 44.2
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 3.4e-30 136.3 266 38.7
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 7.5e-30 135.2 244 39.3
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 2.2e-29 133.7 267 39.0
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 8.3e-29 131.7 248 36.3
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.4e-28 130.2 239 38.1
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 2.4e-28 130.2 248 42.3
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 7.1e-28 128.6 252 40.5
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 2.1e-27 127.1 262 37.0
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 2.7e-27 126.7 226 41.6
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 4.6e-27 125.9 253 40.7
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 7.8e-27 125.2 250 41.2
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 7.8e-27 125.2 254 37.0
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 1.0e-26 124.8 255 36.1
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 1.0e-26 124.8 254 37.4
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 3.0e-26 123.2 244 40.2
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 3.0e-26 123.2 263 36.5
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 5.1e-26 122.5 251 39.0
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.1e-25 121.3 252 36.5
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 5.6e-25 119.0 247 38.9
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.2e-24 117.9 245 38.8
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 1.6e-24 117.5 252 37.3
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 2.8e-24 116.7 250 37.6
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 4.7e-24 115.9 249 39.4
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 4.7e-24 115.9 247 35.6
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 6.2e-24 115.5 237 37.6
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 4.0e-23 112.8 220 38.6
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 6.8e-23 112.1 258 37.2
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 6.8e-23 112.1 252 34.5
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 8.9e-23 111.7 245 35.9
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 2.0e-22 110.5 243 38.7
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 1.3e-21 107.8 252 35.3
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 4.9e-21 105.9 259 33.2
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 1.1e-20 104.8 251 35.5
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 1.4e-20 104.4 251 35.5
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 1.9e-20 104.0 208 39.4
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 2.4e-20 103.6 245 35.5
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 4.2e-20 102.8 263 36.9
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 4.2e-20 102.8 253 33.6
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 5.4e-20 102.4 244 34.8
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 5.4e-20 102.4 246 36.6
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 7.1e-20 102.1 261 35.2
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 2.1e-19 100.5 267 34.5
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 3.5e-19 99.8 125 43.2
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 2.3e-18 97.1 119 42.9
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 3.9e-18 96.3 253 34.8
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 3.9e-18 96.3 237 34.2
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 3.9e-18 96.3 237 34.2
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 5.1e-18 95.9 257 35.0
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 5.1e-18 95.9 121 40.5
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 1.1e-17 94.7 98 49.0
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 1.1e-17 94.7 245 35.9
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 1.5e-17 94.4 118 41.5
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 2.5e-17 93.6 236 33.1
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 3.3e-17 93.2 125 41.6
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 9.6e-17 91.7 284 32.7
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 9.6e-17 91.7 234 35.0
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 1.6e-16 90.9 239 33.5
QL12p025899 Quercus lobata HOM05D005081 ORTHO05D005506 2.8e-16 90.1 248 33.5
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 1.4e-15 87.8 242 33.1
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 1.8e-15 87.4 284 32.0
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 5.3e-15 85.9 249 35.3
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 5.3e-15 85.9 219 35.6
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 5.3e-15 85.9 87 51.7
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 6.9e-15 85.5 274 32.1
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 1.2e-14 84.7 157 34.4
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 2.6e-14 83.6 224 37.5
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 4.4e-14 82.8 251 35.5
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 4.4e-14 82.8 251 35.5
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 4.4e-14 82.8 251 35.5
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 5.8e-14 82.4 158 37.3
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 5.8e-14 82.4 254 31.5
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 1.1e-12 78.2 281 30.2
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 3.2e-12 76.6 246 30.1
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 2.7e-11 73.6 112 42.9
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 2.7e-11 73.6 245 30.6
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 1.1e-09 68.2 64 60.9
Peaxi162Scf00451g00717 Petunia axillaris HOM05D005081 ORTHO05D005506 1.1e-09 68.2 86 43.0
Peaxi162Scf47975g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 2.4e-07 60.5 105 36.2
Glyma.04G077700 Glycine max HOM05D027503 ORTHO05D005506 3.1e-07 60.1 191 31.4
Peaxi162Scf00075g00074 Petunia axillaris HOM05D005081 ORTHO05D005506 9.0e-07 58.5 81 39.5


User provided reference genes

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