Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 4.3e-104 381.3 193 100.0
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 7.1e-91 337.4 193 87.0
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 3.0e-89 332.0 192 83.9
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 1.5e-88 329.7 193 81.9
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 1.9e-88 329.3 192 82.3
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 2.9e-84 315.5 192 80.2
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 6.5e-84 314.3 193 80.3
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 1.4e-83 313.2 191 78.5
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 1.9e-83 312.8 193 77.2
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 2.5e-83 312.4 193 78.2
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 7.1e-83 310.8 193 77.7
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 9.3e-83 310.5 191 78.5
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 1.2e-82 310.1 193 77.2
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 2.7e-82 308.9 193 76.7
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 3.5e-82 308.5 193 78.8
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 1.3e-81 306.6 191 78.0
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 1.3e-81 306.6 192 77.6
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 2.3e-81 305.8 193 77.7
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 8.7e-81 303.9 235 66.0
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 2.5e-80 302.4 185 78.9
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 3.3e-80 302.0 192 76.6
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 3.3e-80 302.0 190 78.9
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 7.4e-80 300.8 213 70.9
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 1.3e-79 300.1 193 76.2
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 1.3e-79 300.1 185 77.3
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 3.7e-79 298.5 191 75.4
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 1.4e-78 296.6 190 75.8
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 1.4e-78 296.6 193 74.1
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 4.1e-78 295.0 189 74.1
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 6.9e-78 294.3 194 74.2
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 9.0e-78 293.9 193 73.6
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 9.0e-78 293.9 191 73.8
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 1.5e-77 293.1 191 75.4
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 2.0e-77 292.7 193 73.6
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 2.6e-77 292.4 191 77.0
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 4.5e-77 291.6 193 74.1
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 4.5e-77 291.6 190 74.2
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 1.0e-76 290.4 193 74.6
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 1.7e-76 289.7 191 72.3
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 2.2e-76 289.3 191 73.3
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 2.9e-76 288.9 185 75.7
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 5.0e-76 288.1 193 74.1
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 6.5e-76 287.7 191 72.3
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 1.9e-75 286.2 191 72.3
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 2.5e-75 285.8 193 74.1
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 1.2e-74 283.5 191 70.2
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 1.2e-74 283.5 193 73.1
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 1.6e-74 283.1 189 73.5
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 3.6e-74 282.0 191 71.2
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 4.6e-74 281.6 184 70.7
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 1.0e-73 280.4 193 69.4
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 6.7e-73 277.7 176 75.6
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 8.8e-73 277.3 191 71.7
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 1.1e-72 276.9 188 73.4
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 1.5e-72 276.6 189 71.4
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 2.0e-72 276.2 185 70.3
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 2.0e-72 276.2 191 68.1
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 5.7e-72 274.6 185 70.3
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 1.7e-71 273.1 193 71.5
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 6.3e-71 271.2 193 72.0
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 1.4e-70 270.0 189 68.8
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 4.1e-70 268.5 169 77.5
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 1.5e-69 266.5 176 75.6
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 2.0e-69 266.2 175 73.1
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 1.7e-68 263.1 187 66.8
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 5.0e-68 261.5 193 65.3
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 3.2e-67 258.8 230 59.1
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 9.4e-67 257.3 164 76.2
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 9.4e-67 257.3 164 76.2
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 3.0e-65 252.3 193 62.2
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 1.1e-64 250.4 154 77.9
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 5.7e-64 248.1 171 71.9
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 7.4e-64 247.7 169 68.0
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 9.7e-64 247.3 154 77.9
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 6.3e-63 244.6 153 75.2
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 5.5e-59 231.5 160 71.9
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 3.6e-58 228.8 209 56.0
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 9.1e-54 214.2 137 74.5
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 2.6e-53 212.6 137 73.7
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 1.9e-51 206.5 207 54.1
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 1.0e-49 200.7 129 73.6
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 5.7e-48 194.9 125 74.4
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 1.8e-46 189.9 131 68.7
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 4.5e-45 185.3 153 63.4
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 1.0e-41 174.1 215 47.9
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.8e-41 173.3 109 74.3
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 1.7e-36 156.8 103 73.8
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 1.2e-34 150.6 133 60.9
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 3.6e-34 149.1 90 81.1
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 6.1e-34 148.3 132 56.1
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 2.8e-31 139.4 76 90.8
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 1.6e-29 133.7 192 43.2
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 8.6e-28 127.9 79 73.4
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 6.1e-26 121.7 140 50.7
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 8.9e-25 117.9 70 77.1
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 6.4e-23 111.7 73 69.9
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 7.0e-22 108.2 186 38.7
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 4.6e-21 105.5 185 33.5
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 1.7e-20 103.6 185 33.5
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 1.7e-20 103.6 128 36.7
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 1.1e-19 100.9 185 33.0
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 5.6e-19 98.6 60 76.7
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 3.1e-17 92.8 60 76.7
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 7.5e-16 88.2 130 41.5
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 9.8e-16 87.8 163 38.0
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 1.7e-15 87.0 74 63.5
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 6.4e-15 85.1 60 66.7
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 4.3e-11 72.4 173 30.6
arahy.Tifrunner.gnm1.ann1.A1T4XS Arachis hypogaea HOM05D006972 ORTHO05D008519 2.8e-10 69.7 64 54.7
arahy.Tifrunner.gnm1.ann1.BGC890 Arachis hypogaea HOM05D006972 ORTHO05D008519 1.2e-08 64.3 61 54.1
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 4.1e-06 55.8 32 75.0


User provided reference genes

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