Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043241 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D001849 6.4e-41 170.2 82 100.0
CSS0035202 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.5e-29 132.5 81 80.2
vmacro20625 Vaccinium macrocarpon HOM05D001842 ORTHO05D001849 8.2e-12 73.6 89 46.1
Actinidia22891 Actinidia chinensis HOM05D001842 ORTHO05D001849 5.8e-10 67.4 89 51.7
Rhsim10G0194400 Rhododendron simsii HOM05D001842 ORTHO05D001849 2.2e-09 65.5 89 42.7
Potri.002G008600 Populus trichocarpa HOM05D001842 ORTHO05D001849 7.1e-08 60.5 75 49.3
Sabra02G0006400 Salix brachista HOM05D001842 ORTHO05D001849 2.1e-07 58.9 75 48.0
Cfa014111 Carpinus fangiana HOM05D001842 ORTHO05D001849 1.0e-06 56.6 38 71.1
CiPaw.07G136200 Carya illinoinensis HOM05D001842 ORTHO05D001849 1.0e-06 56.6 39 66.7
Glyma.04G016600 Glycine max HOM05D001842 ORTHO05D001849 1.0e-06 56.6 100 40.0
Manes.18G003700 Manihot esculenta HOM05D001842 ORTHO05D001849 1.0e-06 56.6 63 46.0
Potri.005G253000 Populus trichocarpa HOM05D001842 ORTHO05D001849 1.0e-06 56.6 50 58.0
ATR0807G019 Amborella trichopoda HOM05D001842 ORTHO05D001849 1.3e-06 56.2 42 64.3
AL1G33750 Arabidopsis lyrata HOM05D001842 ORTHO05D001849 1.3e-06 56.2 38 71.1
CiPaw.08G075300 Carya illinoinensis HOM05D001842 ORTHO05D001849 1.3e-06 56.2 38 68.4
Manes.05G124400 Manihot esculenta HOM05D001842 ORTHO05D001849 1.3e-06 56.2 69 44.9
Thecc.08G062300 Theobroma cacao HOM05D001842 ORTHO05D001849 1.3e-06 56.2 63 46.0
CSS0024804 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.8e-06 55.8 73 47.9
CSS0030981 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.8e-06 55.8 73 47.9
Eucgr.F01786 Eucalyptus grandis HOM05D001842 ORTHO05D001849 1.8e-06 55.8 86 44.2
CSS0003960 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 2.3e-06 55.5 23 95.7
Glyma.06G016700 Glycine max HOM05D001842 ORTHO05D001849 2.3e-06 55.5 100 39.0
Manes.01G155900 Manihot esculenta HOM05D001842 ORTHO05D001849 2.3e-06 55.5 23 95.7
TWI09G0475 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 2.3e-06 55.5 23 95.7
Hma1.2p1_0085F.1_g044600 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 3.0e-06 55.1 93 39.8
Sabra05G0196200 Salix brachista HOM05D001842 ORTHO05D001849 3.0e-06 55.1 38 68.4
CSS0001048 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 3.9e-06 54.7 23 95.7
Duzib093G1115 Durio zibethinus HOM05D001842 ORTHO05D001849 3.9e-06 54.7 63 44.4
Aa31LG7G4920 Aethionema arabicum HOM05D001842 ORTHO05D001849 5.1e-06 54.3 38 68.4
CSS0030508 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 5.1e-06 54.3 24 87.5
CSS0044783 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 5.1e-06 54.3 24 87.5
Dinv28318 Davidia involucrata HOM05D001842 ORTHO05D001849 5.1e-06 54.3 93 40.9
TAR376G0454 Trochodendron aralioides HOM05D001842 ORTHO05D001849 5.1e-06 54.3 93 38.7
Actinidia17353 Actinidia chinensis HOM05D001842 ORTHO05D001849 6.7e-06 53.9 23 91.3
BcaB03g12856 Brassica carinata HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 68.4
BcaB03g14302 Brassica carinata HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 68.4
BcaC06g34833 Brassica carinata HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 68.4
A07p15500 Brassica napus HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 68.4
C07p22830 Brassica napus HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 68.4
C08p20340 Brassica napus HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 68.4
BolC8t49662H Brassica oleracea HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 68.4
BraA07t29291Z Brassica rapa HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 68.4
Carub.0001s2021 Capsella rubella HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 68.4
Thhalv10006674m.g Eutrema salsugineum HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 68.4
Gohir.A07G171600 Gossypium hirsutum HOM05D001842 ORTHO05D001849 6.7e-06 53.9 80 40.0
Gohir.D07G178300 Gossypium hirsutum HOM05D001842 ORTHO05D001849 6.7e-06 53.9 80 40.0
Nn5g30998 Nelumbo nucifera HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 68.4
QL11p056280 Quercus lobata HOM05D001842 ORTHO05D001849 6.7e-06 53.9 26 84.6
Sp1g18460 Schrenkiella parvula HOM05D001842 ORTHO05D001849 6.7e-06 53.9 38 68.4
A08p29280 Brassica napus HOM05D001842 ORTHO05D001849 8.7e-06 53.5 76 40.8
COL.COLO4_07214 Corchorus olitorius HOM05D001842 ORTHO05D001849 8.7e-06 53.5 49 46.9
Haze_02003 Corylus avellana HOM05D001842 ORTHO05D001849 8.7e-06 53.5 23 91.3
MD05G1135500 Malus domestica HOM05D001842 ORTHO05D001849 8.7e-06 53.5 23 91.3
PSO541G1162 Papaver somniferum HOM05D001842 ORTHO05D001849 8.7e-06 53.5 23 91.3
PSO675G7298 Papaver somniferum HOM05D001842 ORTHO05D001849 8.7e-06 53.5 23 91.3
Sed0008264 Sechium edule HOM05D001842 ORTHO05D001849 8.7e-06 53.5 23 91.3
Sed0023090 Sechium edule HOM05D001842 ORTHO05D001849 8.7e-06 53.5 23 91.3
Sc05g0006840 Simmondsia chinensis HOM05D001842 ORTHO05D001849 8.7e-06 53.5 23 91.3


User provided reference genes

Program Settings