Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.4e-245 852.4 411 100.0
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.8e-230 801.6 386 99.7
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.4e-215 751.5 412 87.9
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.9e-214 747.7 412 87.4
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 4.0e-208 728.0 409 84.6
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 9.8e-207 723.4 404 87.1
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.1e-205 719.9 410 85.1
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 1.7e-198 696.0 386 85.8
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.1e-192 675.2 427 77.8
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 9.9e-191 670.2 411 77.1
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 3.8e-190 668.3 401 77.3
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 1.1e-189 666.8 412 77.4
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 4.2e-189 664.8 406 75.9
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 7.1e-189 664.1 409 75.3
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 2.1e-188 662.5 404 75.0
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 7.8e-188 660.6 409 75.8
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.3e-187 659.8 502 67.1
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 1.7e-187 659.4 406 75.9
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 1.1e-186 656.8 411 74.7
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 1.5e-186 656.4 410 73.9
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.3e-185 653.3 398 76.9
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 1.3e-185 653.3 410 73.9
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.6e-185 652.9 390 76.9
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 8.1e-185 650.6 388 77.1
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.1e-184 650.2 410 75.1
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.4e-184 649.8 402 74.6
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.4e-184 649.8 402 74.6
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.5e-183 646.4 410 74.4
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 2.6e-183 645.6 396 76.3
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 3.4e-183 645.2 410 73.4
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 3.4e-183 645.2 396 75.3
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.4e-183 645.2 406 73.9
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.8e-183 644.4 400 75.0
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.7e-182 642.9 396 74.7
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 1.7e-182 642.9 408 74.0
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 1.7e-182 642.9 409 75.3
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.8e-182 641.7 396 74.5
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.1e-181 640.2 398 75.1
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.4e-181 639.8 398 75.4
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.4e-181 639.0 390 75.9
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.2e-181 638.6 407 72.0
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 4.2e-181 638.3 403 74.2
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 5.4e-181 637.9 390 76.7
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.2e-180 636.7 406 72.4
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 2.7e-180 635.6 408 74.0
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 4.6e-180 634.8 414 73.7
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 4.6e-180 634.8 407 71.5
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 4.6e-180 634.8 398 75.6
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 6.0e-180 634.4 404 72.3
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 3.9e-179 631.7 379 77.6
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 3.9e-179 631.7 409 72.9
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 5.1e-179 631.3 408 73.8
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 1.5e-178 629.8 384 77.1
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.5e-178 629.0 431 70.5
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.3e-178 628.6 431 70.5
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 4.3e-178 628.2 409 71.4
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.6e-178 627.9 407 71.0
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 1.3e-177 626.7 411 70.8
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 4.8e-177 624.8 401 73.6
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 1.1e-176 623.6 374 76.5
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 1.1e-176 623.6 378 75.7
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.4e-176 623.2 339 87.0
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 2.4e-176 622.5 439 67.7
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 4.0e-176 621.7 387 72.6
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 4.0e-176 621.7 390 75.4
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 4.0e-176 621.7 378 75.7
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 5.3e-176 621.3 410 70.0
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 6.9e-176 620.9 383 75.2
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 2.6e-175 619.0 374 76.5
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 4.5e-175 618.2 394 72.3
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 2.2e-174 615.9 410 71.7
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 2.2e-174 615.9 399 73.7
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.8e-174 615.1 379 76.5
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 4.9e-174 614.8 403 71.2
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 8.4e-174 614.0 383 74.7
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.1e-173 613.6 409 70.9
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.4e-173 613.2 396 72.5
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.9e-173 612.8 412 69.2
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 3.2e-173 612.1 408 71.3
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 7.1e-173 610.9 404 71.0
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.0e-171 607.1 404 70.0
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.3e-171 606.7 412 68.4
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.1e-170 603.6 375 73.3
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.9e-170 602.8 400 68.8
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 1.9e-170 602.8 400 68.5
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 5.6e-170 601.3 409 69.2
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 5.6e-170 601.3 450 66.2
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.3e-169 600.1 400 68.5
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 2.1e-169 599.4 409 69.4
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.8e-168 596.3 380 71.6
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 2.4e-168 595.9 377 72.4
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 2.0e-167 592.8 378 72.5
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 3.4e-167 592.0 405 71.1
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 2.2e-166 589.3 394 68.3
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 3.8e-166 588.6 395 68.4
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.9e-166 588.2 395 67.6
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 1.1e-165 587.0 401 68.3
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.9e-165 586.3 409 68.0
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.9e-165 586.3 388 69.1
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.2e-165 585.1 395 67.1
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.9e-163 578.6 387 69.0
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 1.1e-162 577.0 394 67.3
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 9.6e-162 573.9 394 67.3
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.3e-161 573.5 394 67.0
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 4.8e-161 571.6 395 66.6
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 6.2e-161 571.2 394 66.8
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.2e-161 571.2 414 66.2
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 8.2e-161 570.9 394 66.8
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 8.2e-161 570.9 394 67.0
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.4e-160 570.1 379 68.9
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.4e-160 570.1 379 68.9
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.4e-160 570.1 379 68.9
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.3e-160 568.2 375 70.4
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 6.9e-160 567.8 553 54.8
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.2e-159 567.0 355 81.1
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.0e-158 563.9 385 68.8
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 1.0e-158 563.9 403 68.7
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.3e-158 563.5 341 77.7
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.7e-158 563.1 379 67.5
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 2.2e-158 562.8 444 62.2
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.9e-158 562.4 399 65.7
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 1.6e-156 556.6 410 63.2
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 4.6e-156 555.1 387 66.4
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.3e-155 553.5 418 62.7
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 3.9e-155 552.0 409 65.3
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 9.7e-154 547.4 373 67.3
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 8.2e-153 544.3 409 63.1
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.0e-150 537.3 388 66.2
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 6.5e-150 534.6 412 62.6
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 9.4e-149 530.8 384 65.9
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 6.7e-147 524.6 401 62.8
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 7.4e-146 521.2 356 67.1
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.2e-141 505.4 383 63.7
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.5e-138 496.9 355 67.9
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 4.8e-129 465.3 432 53.7
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.6e-124 449.1 336 61.9
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.8e-123 446.8 364 58.8
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 3.5e-119 432.6 419 48.9
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.2e-116 424.1 403 50.6
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 6.1e-116 421.8 342 61.1
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.3e-113 414.1 253 77.9
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.8e-113 412.9 380 51.1
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 4.5e-111 405.6 391 49.9
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.1e-96 357.8 426 44.8
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 3.1e-91 339.7 320 52.8
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.3e-85 319.7 197 74.1
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.4e-83 314.3 196 79.1
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.2e-73 280.4 219 62.6
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.3e-49 201.4 149 64.4
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 1.2e-47 194.9 112 81.2
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 2.6e-42 177.2 101 83.2
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 5.3e-35 152.9 113 62.8
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.3e-35 152.9 149 54.4
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 2.6e-34 150.6 209 36.8
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 6.5e-33 146.0 112 67.9
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.1e-32 145.2 112 67.9
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 5.7e-29 132.9 84 69.0
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.3e-28 131.7 81 71.6
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 3.1e-27 127.1 93 63.4
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.1e-27 126.7 86 68.6
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.5e-24 117.5 112 61.6
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 2.1e-23 114.4 350 27.7
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.1e-23 114.4 71 70.4
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.2e-20 104.4 62 74.2
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 2.2e-17 94.4 67 71.6
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 2.3e-14 84.3 78 48.7
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 3.0e-14 84.0 48 81.2
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.7e-09 68.2 45 64.4
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 2.5e-08 64.3 53 47.2
ATR0681G284 Amborella trichopoda HOM05D003877 ORTHO05D038325 9.4e-08 62.4 60 41.7
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.6e-07 61.6 39 69.2
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 8.0e-07 59.3 53 56.6
PSO063G3403 Papaver somniferum HOM05D000240 ORTHO05D002721 8.8e-06 55.8 58 41.4


User provided reference genes

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