Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.5e-71 272.7 136 100.0
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 5.4e-69 264.2 136 95.6
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 7.8e-68 260.4 136 94.1
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.7e-67 259.2 136 93.4
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.7e-67 259.2 136 91.9
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.9e-67 258.1 148 89.9
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.5e-66 256.1 136 91.9
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.5e-66 255.4 136 92.6
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 2.5e-66 255.4 136 91.2
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 3.3e-66 255.0 136 92.6
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 9.5e-66 253.4 136 91.9
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.2e-65 253.1 138 92.0
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.2e-65 253.1 138 92.0
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.6e-65 252.7 136 90.4
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 90.4
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 89.0
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 2.8e-65 251.9 138 91.3
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 3.6e-65 251.5 136 89.7
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 3.6e-65 251.5 136 90.4
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 4.7e-65 251.1 136 89.7
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 8.1e-65 250.4 136 89.0
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 8.1e-65 250.4 136 89.7
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.1e-64 250.0 136 89.7
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 1.1e-64 250.0 136 89.7
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.1e-64 250.0 136 89.7
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.1e-64 250.0 136 88.2
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.8e-64 249.2 136 89.0
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.8e-64 249.2 136 89.0
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.8e-64 249.2 136 89.0
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 2.4e-64 248.8 136 89.0
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 2.4e-64 248.8 136 89.0
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 2.4e-64 248.8 136 89.0
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.4e-64 248.8 136 89.0
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 3.1e-64 248.4 137 89.1
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 4.0e-64 248.1 136 89.0
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 6.8e-64 247.3 136 89.0
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 8.9e-64 246.9 136 88.2
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 8.9e-64 246.9 136 88.2
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 8.9e-64 246.9 136 88.2
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 8.9e-64 246.9 136 88.2
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 8.9e-64 246.9 136 88.2
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 1.2e-63 246.5 136 87.5
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.5e-63 246.1 136 88.2
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.5e-63 246.1 136 88.2
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 2.0e-63 245.7 136 86.0
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 2.0e-63 245.7 136 89.0
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 2.0e-63 245.7 136 89.0
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.6e-63 245.4 159 79.9
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.6e-63 245.4 136 87.5
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.6e-63 245.4 136 87.5
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 4.4e-63 244.6 136 87.5
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 9.9e-63 243.4 136 86.8
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 1.7e-62 242.7 136 86.0
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 1.7e-62 242.7 137 88.3
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 2.9e-62 241.9 136 85.3
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 3.8e-62 241.5 172 73.3
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 3.8e-62 241.5 136 86.0
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 4.9e-62 241.1 136 84.6
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 4.9e-62 241.1 136 86.8
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.1e-61 240.0 136 86.0
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.4e-61 239.6 136 84.6
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 1.9e-61 239.2 137 87.6
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.2e-61 238.4 153 81.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 7.1e-61 237.3 149 80.5
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 2.7e-60 235.3 137 84.7
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 1.7e-59 232.6 136 80.1
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 2.3e-59 232.3 136 80.9
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 3.0e-59 231.9 136 80.1
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.8e-56 222.6 136 80.9
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 4.0e-56 221.5 136 82.4
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.9e-56 220.7 136 80.1
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 1.2e-55 219.9 139 79.1
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 3.4e-55 218.4 189 64.0
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 4.4e-55 218.0 169 68.6
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 9.3e-53 210.3 136 79.4
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 8.7e-51 203.8 124 83.1
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.3e-50 201.4 120 82.5
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.6e-49 198.4 105 90.5
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.1e-48 196.8 110 84.5
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 9.0e-48 193.7 105 88.6
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 2.6e-47 192.2 106 86.8
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.3e-46 189.9 136 76.5
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 4.2e-45 184.9 107 83.2
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 7.1e-45 184.1 136 72.1
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.3e-43 179.9 169 60.4
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.8e-43 179.5 136 69.9
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.6e-41 172.9 136 69.1
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 1.1e-40 170.2 138 68.1
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.5e-39 166.4 136 66.2
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 7.6e-39 164.1 136 65.4
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 3.8e-38 161.8 156 57.7
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 2.1e-36 156.0 80 93.8
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 6.0e-36 154.5 142 49.3
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 5.1e-35 151.4 77 96.1
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 8.7e-35 150.6 80 91.2
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 1.5e-34 149.8 82 90.2
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.5e-34 149.1 82 90.2
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 3.3e-34 148.7 82 87.8
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 5.6e-34 147.9 77 92.2
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 7.4e-34 147.5 77 93.5
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.6e-33 146.4 77 92.2
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.6e-33 146.4 82 87.8
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 2.8e-33 145.6 128 52.3
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 3.7e-33 145.2 77 90.9
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 3.7e-33 145.2 77 90.9
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 6.2e-33 144.4 77 90.9
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 8.2e-33 144.1 81 87.7
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 8.2e-33 144.1 76 93.4
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 1.1e-32 143.7 77 90.9
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 1.4e-32 143.3 156 51.3
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 5.3e-32 141.4 133 49.6
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 6.9e-32 141.0 82 82.9
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 6.9e-32 141.0 82 82.9
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.2e-31 140.2 77 88.3
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 1.5e-31 139.8 77 87.0
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.5e-31 139.8 77 88.3
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 2.0e-31 139.4 77 87.0
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 2.6e-31 139.0 77 87.0
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 5.8e-31 137.9 77 87.0
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 5.8e-31 137.9 77 87.0
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 5.8e-31 137.9 77 87.0
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 5.8e-31 137.9 77 87.0
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 5.8e-31 137.9 77 87.0
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 1.0e-30 137.1 77 85.7
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.3e-30 136.7 77 85.7
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 1.3e-30 136.7 75 89.3
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 1.3e-30 136.7 77 85.7
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 1.3e-30 136.7 77 85.7
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 1.3e-30 136.7 77 85.7
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 1.3e-30 136.7 77 85.7
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 1.3e-30 136.7 80 82.5
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 1.7e-30 136.3 77 85.7
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.7e-30 136.3 77 85.7
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 6.5e-30 134.4 87 77.0
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.5e-29 132.5 77 83.1
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 2.5e-29 132.5 126 59.5
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 6.0e-28 127.9 74 81.1
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 5.1e-27 124.8 116 61.2
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 9.7e-26 120.6 60 93.3
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.4e-24 116.7 60 90.0
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 1.3e-22 110.2 56 92.9
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 1.3e-22 110.2 56 92.9
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 1.3e-22 110.2 56 92.9
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.9e-22 109.0 56 89.3
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 3.8e-22 108.6 56 89.3
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 5.0e-22 108.2 56 91.1
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 5.0e-22 108.2 56 91.1
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 3.2e-21 105.5 56 89.3
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 9.4e-21 104.0 75 61.3
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 4.6e-20 101.7 50 98.0
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 6.1e-20 101.3 110 52.7
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 2.3e-19 99.4 57 82.5
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 3.0e-19 99.0 56 83.9
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 4.3e-18 95.1 56 80.4
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 1.0e-14 84.0 44 84.1
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 3.2e-13 79.0 45 84.4
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 2.1e-12 76.3 126 36.5
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 9.1e-08 60.8 41 75.6
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 1.7e-06 56.6 25 100.0
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.9e-06 55.8 135 25.2


User provided reference genes

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