Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043147 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 7.6e-95 350.5 181 100.0
CSS0036155 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 1.2e-76 290.0 180 88.3
CSS0040448 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 2.4e-48 196.1 133 78.9
CSS0022382 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 7.3e-37 157.9 163 58.3
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 9.2e-32 141.0 131 66.4
CSS0011152 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 5.0e-30 135.2 164 51.8
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 5.4e-24 115.2 132 54.5
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.2e-23 114.0 125 57.6
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.1e-20 103.2 159 45.9
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 3.6e-20 102.4 145 49.0
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.4e-19 100.5 107 57.0
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.4e-19 100.5 121 48.8
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 2.3e-19 99.8 158 43.7
Hma1.2p1_0356F.1_g134010 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 4.0e-19 99.0 102 61.8
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 4.0e-19 99.0 142 45.1
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 6.8e-19 98.2 146 49.3
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.2e-18 97.4 133 48.1
Hma1.2p1_1294F.1_g273870 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 1.2e-18 97.4 102 60.8
Hma1.2p1_1431F.1_g282990 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 1.2e-18 97.4 102 60.8
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.2e-18 97.4 106 56.6
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 1.5e-18 97.1 106 54.7
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 2.6e-18 96.3 121 46.3
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 3.4e-18 95.9 131 48.1
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 5.8e-18 95.1 130 46.2
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 9.9e-18 94.4 121 47.9
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 2.9e-17 92.8 153 44.4
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 4.9e-17 92.0 136 46.3
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 4.9e-17 92.0 130 45.4
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 4.9e-17 92.0 130 45.4
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 4.9e-17 92.0 95 55.8
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 8.3e-17 91.3 154 42.9
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.9e-16 90.1 155 40.6
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.9e-16 90.1 155 40.6
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 3.2e-16 89.4 157 41.4
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 4.1e-16 89.0 105 49.5
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 4.1e-16 89.0 130 43.8
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 5.4e-16 88.6 146 40.4
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 7.1e-16 88.2 160 40.6
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.6e-15 87.0 127 44.9
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 1.6e-15 87.0 153 39.2
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 1.6e-15 87.0 155 38.7
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.1e-15 86.7 120 45.8
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 2.7e-15 86.3 135 45.9
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 3.5e-15 85.9 154 40.3
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.5e-15 85.9 104 51.9
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 3.5e-15 85.9 135 44.4
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 4.6e-15 85.5 153 43.1
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 6.0e-15 85.1 145 40.0
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 6.0e-15 85.1 133 42.9
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 6.0e-15 85.1 140 43.6
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 7.8e-15 84.7 152 40.8
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 1.0e-14 84.3 160 38.1
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 1.7e-14 83.6 144 43.8
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 3.0e-14 82.8 115 42.6
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 3.9e-14 82.4 134 42.5
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 5.1e-14 82.0 130 41.5
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 5.1e-14 82.0 103 48.5
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 6.6e-14 81.6 133 43.6
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 6.6e-14 81.6 130 42.3
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.5e-13 80.5 146 37.0
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 1.5e-13 80.5 121 43.8
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 1.9e-13 80.1 156 41.7
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.5e-13 79.7 157 38.9
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 2.5e-13 79.7 133 42.9
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 2.5e-13 79.7 134 44.0
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 3.3e-13 79.3 130 43.1
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 4.3e-13 79.0 135 43.7
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 4.3e-13 79.0 105 46.7
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 5.6e-13 78.6 102 45.1
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 9.6e-13 77.8 156 41.0
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 9.6e-13 77.8 105 46.7
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 1.2e-12 77.4 156 41.7
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 1.2e-12 77.4 121 43.0
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 1.2e-12 77.4 105 45.7
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.2e-12 77.4 176 34.7
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.6e-12 77.0 145 35.9
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 2.1e-12 76.6 107 43.0
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 2.8e-12 76.3 157 42.7
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 3.6e-12 75.9 116 45.7
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 3.6e-12 75.9 156 40.4
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 3.6e-12 75.9 156 41.0
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 3.6e-12 75.9 156 41.0
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 3.6e-12 75.9 176 34.7
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 4.7e-12 75.5 139 38.1
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 4.7e-12 75.5 156 40.4
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 6.2e-12 75.1 156 39.7
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 6.2e-12 75.1 114 44.7
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 6.2e-12 75.1 156 39.7
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 6.2e-12 75.1 156 41.7
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 6.2e-12 75.1 117 47.0
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 8.1e-12 74.7 154 36.4
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.1e-11 74.3 156 39.1
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.1e-11 74.3 147 36.1
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 1.1e-11 74.3 114 41.2
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 1.1e-11 74.3 133 37.6
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.1e-11 74.3 125 39.2
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.1e-11 74.3 109 45.9
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 1.4e-11 73.9 114 43.9
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 1.4e-11 73.9 156 41.0
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 1.4e-11 73.9 132 42.4
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 1.4e-11 73.9 157 42.0
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 1.4e-11 73.9 131 39.7
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.4e-11 73.9 109 45.0
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 1.8e-11 73.6 156 41.0
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.8e-11 73.6 156 41.0
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 2.4e-11 73.2 160 36.9
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 4.0e-11 72.4 156 40.4
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 4.0e-11 72.4 117 45.3
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.0e-11 72.4 144 43.1
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.0e-11 72.4 144 43.1
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.0e-11 72.4 144 43.1
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 5.2e-11 72.0 144 43.1
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.2e-11 72.0 144 43.1
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 6.8e-11 71.6 114 40.4
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 6.8e-11 71.6 87 49.4
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.2e-10 70.9 155 34.8
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.5e-10 70.5 148 34.5
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 1.5e-10 70.5 133 37.6
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 2.6e-10 69.7 133 39.1
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 2.6e-10 69.7 133 39.8
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.4e-10 69.3 148 34.5
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 3.4e-10 69.3 117 42.7
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 7.6e-10 68.2 142 34.5
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 7.6e-10 68.2 95 42.1
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 9.9e-10 67.8 160 36.2
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 2.2e-09 66.6 117 41.9
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.9e-09 66.2 106 38.7
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 3.8e-09 65.9 145 36.6
HanXRQChr11g0324561 Helianthus annuus HOM05D002352 ORTHO05D015016 3.2e-08 62.8 83 47.0
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 3.2e-08 62.8 97 41.2
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.2e-07 60.8 97 42.3
Zm00001eb083320 Zea mays HOM05D002352 ORTHO05D016619 2.7e-07 59.7 105 40.0
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 4.6e-07 58.9 97 41.2
Psat3g070400 Pisum sativum HOM05D002352 ORTHO05D015016 6.0e-07 58.5 83 43.4
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 1.3e-06 57.4 118 39.0


User provided reference genes

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