Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 4463.3 2227 100.0
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 4370.1 2227 98.4
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 3522.6 2227 79.9
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 3516.9 2229 79.9
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 3440.2 2253 77.6
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3374.3 2232 76.4
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3372.8 2232 76.4
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3239.9 2232 73.8
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 3021.9 2233 69.2
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2975.3 2236 68.4
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2966.4 2236 68.2
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2962.2 2236 67.9
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2938.7 2240 67.6
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2927.9 2236 67.1
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2898.6 2236 66.3
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2887.8 2239 66.5
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2886.3 2325 65.7
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2885.5 2235 66.0
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2874.0 2241 66.0
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2868.6 2212 66.4
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2861.6 2236 65.7
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2857.4 2236 65.8
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2830.4 2237 65.6
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2825.0 2241 64.8
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2818.1 2237 65.4
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2817.3 2244 65.3
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2795.4 2237 64.4
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2792.7 2235 64.6
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2775.0 2238 64.2
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2755.7 2255 63.5
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2729.9 2251 63.6
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2729.1 2234 64.1
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2713.3 2240 63.2
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2710.6 2238 63.4
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2710.3 2234 63.1
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2706.4 2236 63.1
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2704.9 2239 63.1
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2704.1 2235 63.1
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2695.2 2253 63.0
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2690.2 2233 63.0
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2679.4 2234 62.6
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2664.8 2235 62.3
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2653.6 2233 61.6
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2649.4 2268 62.2
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2646.7 2236 61.5
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2645.2 2240 61.9
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2638.6 2249 62.3
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2637.8 2232 61.3
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2632.4 2240 61.7
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2631.3 2249 62.2
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2621.7 2240 61.9
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2620.9 2247 60.9
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2613.2 2244 60.8
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2593.1 2241 61.0
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2589.3 2249 60.7
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2588.5 2249 60.7
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2579.7 2233 61.5
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2575.8 2247 60.4
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2573.9 2248 60.5
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2567.3 2241 60.5
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2562.3 2244 60.5
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2560.4 2239 60.5
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2546.5 2234 61.1
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2545.8 2236 61.0
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2543.8 2244 60.0
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2541.5 2244 60.2
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2526.1 2242 59.1
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2478.4 2273 58.5
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2453.3 1825 67.7
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2440.6 2249 58.9
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2435.6 2261 59.0
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2434.8 2247 58.7
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2424.8 2251 58.9
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2424.4 2252 58.7
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2422.5 2250 58.8
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2422.5 2250 58.8
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2415.6 2246 58.7
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2415.6 2246 58.7
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2412.1 1824 67.6
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2406.7 2243 58.4
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2398.6 1898 64.7
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2330.4 1838 66.2
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2307.7 2250 57.0
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2255.3 2072 59.1
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2248.8 2331 53.1
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 2239.9 2241 55.5
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2210.3 1717 66.7
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2153.3 2266 53.2
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2071.6 2249 52.4
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1890.2 1424 68.4
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1818.9 2388 44.3
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1762.3 1393 66.8
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1629.4 1710 52.7
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1464.5 2364 40.1
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1457.6 2197 41.5
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1448.0 1068 70.7
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1412.5 2355 38.2
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1302.3 1021 65.3
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1292.3 1127 60.9
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1281.9 2273 36.6
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1279.6 1204 57.7
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1242.6 943 67.1
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1160.2 1019 62.7
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1127.5 1429 47.1
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1091.6 790 71.9
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 2.1e-266 924.1 3050 27.6
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 2.9e-236 823.9 880 51.9
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.6e-229 800.8 735 58.8
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 8.5e-212 742.7 1369 37.0
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 8.0e-178 629.8 1023 41.8
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 1.2e-149 536.2 437 60.0
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 1.2e-144 519.6 2374 25.3
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 6.0e-117 427.6 377 58.9
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 3.3e-91 342.0 338 54.4
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.6e-80 306.6 314 52.9
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 7.7e-80 304.3 769 31.7
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 2.2e-74 286.2 290 56.6
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 7.7e-72 277.7 326 48.8
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 5.0e-71 275.0 234 60.7
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 9.8e-59 234.2 234 53.8
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 1.9e-57 229.9 282 46.5
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.6e-53 216.9 175 66.3
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-41 177.6 224 46.0
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 2.7e-40 172.9 140 65.0
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 2.1e-37 163.3 144 60.4
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 1.5e-35 157.1 95 82.1
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.4e-35 155.6 486 27.2
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 6.2e-29 135.2 117 58.1
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 2.9e-26 126.3 254 33.5
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 4.2e-25 122.5 111 63.1
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 2.3e-23 116.7 102 57.8
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.0e-15 91.3 284 28.5
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 1.2e-08 67.8 570 20.2


User provided reference genes

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