Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.9e-109 398.7 216 100.0
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.4e-108 396.4 216 99.1
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 1.4e-79 300.1 197 81.7
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 8.0e-75 284.3 209 73.2
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 2.0e-70 269.6 208 68.8
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.0e-69 267.3 208 68.3
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 2.1e-67 259.6 208 68.8
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 3.6e-67 258.8 215 68.4
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 4.0e-66 255.4 210 63.8
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 3.4e-65 252.3 209 62.7
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 3.7e-64 248.8 209 63.2
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 4.9e-64 248.4 211 63.0
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 3.5e-62 242.3 207 62.3
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 7.8e-62 241.1 209 62.2
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 3.0e-61 239.2 200 63.5
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 3.0e-61 239.2 210 60.5
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 5.0e-61 238.4 209 60.8
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 6.6e-61 238.0 211 62.6
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.1e-60 237.3 210 64.8
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.5e-60 236.9 207 60.9
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 1.9e-60 236.5 212 59.4
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 3.3e-60 235.7 211 61.6
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 3.3e-60 235.7 209 59.3
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 4.3e-60 235.3 211 62.6
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 9.5e-60 234.2 211 62.1
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 1.2e-59 233.8 212 60.8
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.6e-59 233.4 211 61.6
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 4.7e-59 231.9 210 62.9
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 4.7e-59 231.9 210 59.0
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.1e-58 230.7 210 59.5
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 5.2e-58 228.4 207 58.0
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 5.2e-58 228.4 210 58.1
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 1.5e-57 226.9 211 60.7
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 1.5e-57 226.9 210 60.5
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 2.6e-57 226.1 209 59.3
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 3.4e-57 225.7 210 58.6
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 7.5e-57 224.6 209 58.4
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.3e-56 223.8 210 58.6
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 2.2e-56 223.0 211 59.7
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.9e-56 221.9 210 58.6
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 6.4e-56 221.5 211 57.8
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 1.1e-55 220.7 211 57.3
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.4e-55 220.3 209 55.0
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 1.4e-55 220.3 210 57.6
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 7.1e-55 218.0 210 57.6
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 7.1e-55 218.0 209 59.3
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 1.6e-54 216.9 206 59.2
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.0e-53 214.2 211 56.4
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 2.3e-53 213.0 210 57.6
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 2.3e-53 213.0 211 55.9
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 6.6e-53 211.5 211 55.5
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 2.5e-52 209.5 198 57.1
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 2.5e-52 209.5 207 56.5
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 5.6e-52 208.4 207 56.5
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.2e-51 207.2 211 56.4
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 2.1e-51 206.5 210 55.2
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 2.1e-51 206.5 214 53.3
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 6.2e-51 204.9 200 57.5
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 6.2e-51 204.9 211 55.0
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.1e-50 204.1 211 55.0
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 1.4e-50 203.8 210 53.8
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 1.4e-50 203.8 210 54.8
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.8e-50 203.4 213 55.9
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 6.8e-50 201.4 212 55.2
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 6.8e-50 201.4 218 54.6
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 8.9e-50 201.1 216 52.8
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 1.2e-49 200.7 210 52.9
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 4.4e-49 198.7 208 55.3
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 4.4e-49 198.7 214 52.8
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 7.6e-49 198.0 210 52.4
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 7.6e-49 198.0 216 53.2
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.3e-48 197.2 209 54.1
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 1.3e-48 197.2 210 51.9
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 1.7e-48 196.8 211 54.5
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 1.7e-48 196.8 214 55.1
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 2.2e-48 196.4 211 53.1
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 2.2e-48 196.4 211 55.5
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 2.9e-48 196.1 211 51.7
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 3.8e-48 195.7 210 51.4
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.9e-47 193.4 199 54.8
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 2.4e-47 193.0 216 50.5
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 4.1e-47 192.2 213 49.3
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 5.4e-47 191.8 214 50.0
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 5.4e-47 191.8 208 50.5
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 5.4e-47 191.8 196 55.6
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 7.1e-47 191.4 211 53.1
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 9.2e-47 191.0 211 53.1
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 2.1e-46 189.9 210 56.2
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 3.5e-46 189.1 218 53.2
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 3.5e-46 189.1 181 58.6
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 4.6e-46 188.7 218 50.9
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 1.0e-45 187.6 216 49.5
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 1.7e-45 186.8 210 51.9
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 2.3e-45 186.4 207 50.7
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 3.9e-45 185.7 207 56.5
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 3.9e-45 185.7 199 53.3
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 5.1e-45 185.3 199 53.8
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 3.3e-44 182.6 208 50.5
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 3.3e-44 182.6 199 53.3
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 1.2e-43 180.6 207 49.3
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 1.2e-43 180.6 208 49.0
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 1.4e-42 177.2 208 48.6
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 2.4e-42 176.4 208 51.9
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 3.1e-42 176.0 213 47.9
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 5.2e-42 175.3 207 47.8
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 8.9e-42 174.5 199 48.7
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 1.5e-41 173.7 138 70.3
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 3.4e-41 172.6 199 48.2
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 3.4e-41 172.6 215 46.5
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 4.4e-41 172.2 214 50.5
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 9.9e-41 171.0 201 51.2
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 2.2e-40 169.9 208 46.2
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 2.9e-40 169.5 214 50.0
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 2.9e-40 169.5 205 46.3
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 1.9e-39 166.8 216 46.3
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 1.9e-39 166.8 217 48.4
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 4.2e-39 165.6 196 47.4
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 5.4e-39 165.2 196 47.4
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 7.1e-39 164.9 207 45.4
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 7.1e-39 164.9 196 46.9
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 7.1e-39 164.9 196 46.9
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 1.6e-38 163.7 208 47.1
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 2.1e-38 163.3 210 48.6
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 2.7e-38 162.9 196 46.9
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 4.6e-38 162.2 212 50.5
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 1.0e-37 161.0 193 47.2
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 6.6e-37 158.3 161 55.3
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 8.7e-37 157.9 168 51.2
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.1e-36 157.5 192 45.8
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 1.1e-36 157.5 194 46.9
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 1.5e-36 157.1 209 45.5
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 5.6e-36 155.2 215 45.6
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 1.6e-35 153.7 210 45.2
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 1.6e-35 153.7 142 59.9
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.6e-35 153.7 211 45.5
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 2.1e-35 153.3 206 42.2
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 2.8e-35 152.9 208 45.2
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.1e-34 151.0 198 44.4
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 1.5e-33 147.1 213 47.4
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 1.7e-32 143.7 210 45.7
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 1.3e-29 134.0 213 40.4
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 3.0e-29 132.9 211 40.3
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 2.5e-28 129.8 138 52.2
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.3e-27 127.5 220 40.0
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 4.8e-27 125.6 219 39.7
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 2.4e-26 123.2 117 59.0
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 2.0e-25 120.2 202 38.6
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 8.4e-24 114.8 203 37.4
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 3.2e-23 112.8 115 51.3
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.0e-21 106.3 139 48.2
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.3e-19 100.9 134 46.3
FAN28G2101 Fragaria x ananassa HOM05D004648 ORTHO05D005782 2.0e-09 67.0 48 64.6


User provided reference genes

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