Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 8.5e-185 650.2 331 100.0
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 1.9e-59 233.8 324 50.0
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 7.7e-53 211.8 300 47.0
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 5.9e-45 185.7 280 45.0
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 1.3e-39 167.9 312 37.5
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 6.0e-37 159.1 277 41.9
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.3e-36 157.9 266 42.1
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 1.3e-36 157.9 266 42.1
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 1.7e-36 157.5 236 44.5
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 3.0e-36 156.8 274 42.7
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 1.5e-35 154.5 277 39.7
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 2.5e-35 153.7 284 39.8
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 2.1e-34 150.6 285 40.7
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 2.1e-34 150.6 287 39.7
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 8.1e-34 148.7 268 39.2
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 1.4e-33 147.9 289 36.3
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 6.8e-33 145.6 208 42.8
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 6.8e-33 145.6 208 42.3
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 6.8e-33 145.6 199 45.7
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 1.2e-32 144.8 208 43.3
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 1.5e-32 144.4 208 42.3
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 1.5e-32 144.4 286 39.9
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 2.0e-32 144.1 209 43.5
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.4e-32 143.3 308 36.4
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 4.4e-32 142.9 290 39.7
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 4.4e-32 142.9 280 41.1
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 1.3e-31 141.4 215 43.7
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 1.7e-31 141.0 212 41.5
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 1.7e-31 141.0 194 44.8
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 2.9e-31 140.2 228 43.9
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 3.7e-31 139.8 229 43.7
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 3.7e-31 139.8 284 39.4
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 4.9e-31 139.4 217 41.5
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 4.9e-31 139.4 217 41.5
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 4.9e-31 139.4 217 41.5
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 8.3e-31 138.7 156 50.0
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 8.3e-31 138.7 270 38.1
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 8.3e-31 138.7 234 42.7
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.4e-30 137.9 236 41.5
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 1.9e-30 137.5 278 38.5
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 2.4e-30 137.1 237 40.1
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.4e-30 137.1 286 37.4
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 2.4e-30 137.1 257 38.1
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 3.2e-30 136.7 247 42.1
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 4.1e-30 136.3 207 41.1
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 4.1e-30 136.3 207 41.1
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 7.1e-30 135.6 210 40.5
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 2.1e-29 134.0 175 47.4
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 2.1e-29 134.0 241 43.2
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 2.7e-29 133.7 231 41.6
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.6e-29 132.9 288 36.8
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 6.0e-29 132.5 231 42.4
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 6.0e-29 132.5 163 45.4
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 1.0e-28 131.7 269 38.7
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.0e-28 131.7 233 38.6
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 2.3e-28 130.6 235 38.3
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 5.1e-28 129.4 177 45.8
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 1.5e-27 127.9 158 46.2
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 1.9e-27 127.5 330 35.5
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 3.3e-27 126.7 231 40.7
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 7.3e-27 125.6 157 47.1
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 1.2e-26 124.8 231 39.8
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 1.6e-26 124.4 231 39.8
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 2.1e-26 124.0 165 47.3
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 1.1e-25 121.7 238 39.9
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.2e-24 118.2 287 33.4
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 1.5e-24 117.9 173 42.2
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 1.5e-24 117.9 313 34.2
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 4.4e-24 116.3 193 40.9
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.4e-24 116.3 183 41.0
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.6e-24 115.5 173 41.0
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 1.9e-22 110.9 158 42.4
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 1.2e-21 108.2 148 45.9
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 2.7e-21 107.1 116 51.7
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 2.7e-21 107.1 192 42.2
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 2.7e-21 107.1 154 44.2
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 3.5e-21 106.7 173 40.5
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 6.0e-21 105.9 237 37.1
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 1.7e-20 104.4 143 45.5
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 1.7e-20 104.4 151 43.7
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 2.3e-20 104.0 244 32.8
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 2.3e-20 104.0 166 42.8
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 3.0e-20 103.6 228 39.0
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 5.1e-20 102.8 174 41.4
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 6.6e-20 102.4 174 39.7
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 8.6e-20 102.1 158 45.6
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 8.6e-20 102.1 174 39.7
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 1.5e-19 101.3 170 41.8
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 1.5e-19 101.3 157 43.3
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.5e-19 101.3 160 45.0
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 2.5e-19 100.5 121 47.9
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 4.3e-19 99.8 153 43.8
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 4.3e-19 99.8 205 38.0
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 5.6e-19 99.4 156 41.7
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 7.3e-19 99.0 144 43.8
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 9.6e-19 98.6 159 39.6
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 1.2e-18 98.2 162 42.6
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.6e-18 97.8 120 47.5
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 1.6e-18 97.8 192 39.1
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 4.7e-18 96.3 179 41.9
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 6.2e-18 95.9 324 32.7
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.1e-17 95.1 120 47.5
FvH4_2g04910 Fragaria vesca HOM05D005305 ORTHO05D006394 4.0e-17 93.2 133 45.1
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.9e-17 92.4 162 38.9
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.9e-17 92.4 162 38.9
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.9e-17 92.4 162 38.9
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.9e-17 92.4 162 38.9
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 1.2e-16 91.7 236 32.2
FAN02G3216 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.5e-16 91.3 158 39.2
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 4.4e-16 89.7 197 38.1
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 9.9e-16 88.6 120 45.8
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 2.9e-15 87.0 287 32.1
ATR0311G001 Amborella trichopoda HOM05D005305 ORTHO05D006394 4.9e-15 86.3 154 40.3
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 1.4e-14 84.7 250 30.4
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 3.2e-14 83.6 211 33.6
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.2e-14 83.2 106 47.2
FAN24G2323 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.1e-14 82.4 162 36.4
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 9.3e-14 82.0 164 37.8
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 1.6e-13 81.3 149 38.9
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 1.6e-13 81.3 109 45.9
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 7.8e-13 79.0 210 34.3
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 1.5e-11 74.7 168 32.1
ECA248G2956 Erigeron canadensis HOM05D005305 ORTHO05D006394 2.1e-10 70.9 112 42.9
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 1.1e-09 68.6 172 33.1
FAN22G1821 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.4e-09 68.2 75 52.0
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 1.4e-09 68.2 103 41.7
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 9.0e-09 65.5 106 40.6
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 1.5e-08 64.7 155 31.6
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.0e-08 64.3 111 38.7
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 2.0e-08 64.3 144 35.4
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.6e-08 63.9 123 34.1
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 3.4e-08 63.5 147 34.0
Rhsim13G0160500 Rhododendron simsii HOM05D051295 ORTHO05D006394 9.9e-08 62.0 170 35.3
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 1.3e-07 61.6 103 41.7
C03p81290 Brassica napus HOM05D000250 ORTHO05D015314 1.3e-07 61.6 65 47.7
PGR042G1067 Punica granatum HOM05D007205 ORTHO05D009175 1.7e-07 61.2 142 33.8
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 2.2e-07 60.8 105 43.8
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 2.2e-07 60.8 105 43.8
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 2.9e-07 60.5 105 42.9
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 2.9e-07 60.5 133 35.3
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 2.9e-07 60.5 165 32.1
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 3.8e-07 60.1 118 39.0
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 3.8e-07 60.1 113 38.9
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 3.8e-07 60.1 144 35.4
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 4.9e-07 59.7 98 43.9
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 4.9e-07 59.7 98 43.9
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 4.9e-07 59.7 98 43.9
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 4.9e-07 59.7 123 34.1
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 4.9e-07 59.7 99 36.4
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 6.4e-07 59.3 128 32.8
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 1.1e-06 58.5 114 36.0
EL10Ac1g00741 Beta vulgaris HOM05D006072 ORTHO05D007363 1.4e-06 58.2 142 33.1
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 1.4e-06 58.2 107 41.1
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 1.4e-06 58.2 98 42.9
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 1.4e-06 58.2 178 34.3
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 1.4e-06 58.2 129 35.7
FAN11G0652 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.4e-06 58.2 107 43.0
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 1.4e-06 58.2 181 27.6
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.4e-06 58.2 118 38.1
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 3.2e-06 57.0 133 29.3
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 3.2e-06 57.0 196 32.7
EL10Ac6g14255 Beta vulgaris HOM05D002727 ORTHO05D002856 4.2e-06 56.6 209 29.2
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 4.2e-06 56.6 112 35.7
BolC3t17090H Brassica oleracea HOM05D000430 ORTHO05D000305 5.4e-06 56.2 56 50.0
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 5.4e-06 56.2 107 35.5
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 7.1e-06 55.8 137 32.1
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 7.1e-06 55.8 136 32.4
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 7.1e-06 55.8 154 31.2
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 7.1e-06 55.8 157 29.9
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 7.1e-06 55.8 170 30.6
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 7.1e-06 55.8 139 33.1
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 7.1e-06 55.8 155 30.3
Sed0024961 Sechium edule HOM05D002727 ORTHO05D002856 7.1e-06 55.8 137 28.5
SEGI_15553 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 7.1e-06 55.8 100 35.0
COL.COLO4_20450 Corchorus olitorius HOM05D002727 ORTHO05D002856 9.3e-06 55.5 135 30.4
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 9.3e-06 55.5 93 37.6
FvH4_3g08610 Fragaria vesca HOM05D005305 ORTHO05D006394 9.3e-06 55.5 99 40.4
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 9.3e-06 55.5 73 43.8


User provided reference genes

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