Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043104 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.3e-174 616.3 321 100.0
CSS0028580 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 7.1e-112 407.9 240 90.8
Hma1.2p1_0744F.1_g211701 Hydrangea macrophylla HOM05D003462 ORTHO05D003946 1.2e-106 390.6 265 78.1
CSS0043842 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 4.5e-106 388.7 238 88.2
Nn4g23600 Nelumbo nucifera HOM05D003462 ORTHO05D003946 1.0e-105 387.5 265 75.8
ClCG06G015340 Citrullus lanatus HOM05D003462 ORTHO05D003946 1.7e-105 386.7 265 76.2
Sed0016449 Sechium edule HOM05D003462 ORTHO05D003946 1.7e-105 386.7 265 75.5
Actinidia35059 Actinidia chinensis HOM05D003462 ORTHO05D003946 5.0e-105 385.2 265 77.7
PGR083G2784 Punica granatum HOM05D003462 ORTHO05D003946 1.4e-104 383.6 265 75.1
CSS0029569 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 2.5e-104 382.9 265 80.4
Lj5A138T59 Lonicera japonica HOM05D003462 ORTHO05D003946 3.2e-104 382.5 265 75.8
GSVIVG01008179001 Vitis vinifera HOM05D003462 ORTHO05D003946 4.2e-104 382.1 265 75.8
Cc04_g07970 Coffea canephora HOM05D003462 ORTHO05D003946 1.2e-103 380.6 265 74.7
QL10p021514 Quercus lobata HOM05D003462 ORTHO05D003946 1.6e-103 380.2 265 75.5
CiPaw.15G117200 Carya illinoinensis HOM05D003462 ORTHO05D003946 2.7e-103 379.4 265 74.7
Ciclev10019214m.g Citrus clementina HOM05D003462 ORTHO05D003946 2.7e-103 379.4 265 74.3
TAR371G0026 Trochodendron aralioides HOM05D003462 ORTHO05D003946 2.7e-103 379.4 265 76.2
CSS0013858 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 6.1e-103 378.3 266 77.1
CSS0048759 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 6.1e-103 378.3 266 77.1
Duzib084G0277 Durio zibethinus HOM05D003462 ORTHO05D003946 1.0e-102 377.5 265 75.5
MD14G1217600 Malus domestica HOM05D003462 ORTHO05D003946 2.3e-102 376.3 265 73.6
Cpa.g.sc3.203 Carica papaya HOM05D003462 ORTHO05D003946 3.0e-102 375.9 265 75.1
Thecc.03G111900 Theobroma cacao HOM05D003462 ORTHO05D003946 3.0e-102 375.9 265 74.3
Lj4g0004217 Lotus japonicus HOM05D003462 ORTHO05D003946 6.7e-102 374.8 264 73.9
vmacro16468 Vaccinium macrocarpon HOM05D003462 ORTHO05D003946 6.7e-102 374.8 265 74.7
Gohir.A09G244100 Gossypium hirsutum HOM05D003462 ORTHO05D003946 8.8e-102 374.4 265 74.0
Gohir.D09G245000 Gossypium hirsutum HOM05D003462 ORTHO05D003946 8.8e-102 374.4 265 74.3
FvH4_5g13110 Fragaria vesca HOM05D003462 ORTHO05D003946 1.5e-101 373.6 265 74.3
FAN18G1062 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.5e-101 373.6 265 74.3
Manes.01G024300 Manihot esculenta HOM05D003462 ORTHO05D003946 1.5e-101 373.6 265 74.0
Sopen03g033710 Solanum pennellii HOM05D003462 ORTHO05D003946 2.0e-101 373.2 265 75.5
Atru.chr9.644 Acer truncatum HOM05D003462 ORTHO05D003946 2.5e-101 372.9 265 73.2
Rhsim12G0146800 Rhododendron simsii HOM05D003462 ORTHO05D003946 3.3e-101 372.5 265 74.7
RcHm_v2.0_Chr7g0184041 Rosa chinensis HOM05D003462 ORTHO05D003946 3.3e-101 372.5 265 73.2
DCAR_010190 Daucus carota HOM05D003462 ORTHO05D003946 4.3e-101 372.1 265 74.3
Gorai.006G269300 Gossypium raimondii HOM05D003462 ORTHO05D003946 7.4e-101 371.3 265 73.2
Solyc03g114640.4 Solanum lycopersicum HOM05D003462 ORTHO05D003946 7.4e-101 371.3 265 75.5
PSO017G3345 Papaver somniferum HOM05D003462 ORTHO05D003946 1.3e-100 370.5 265 72.5
PSO478G2116 Papaver somniferum HOM05D003462 ORTHO05D003946 1.7e-100 370.2 265 72.1
TWI81G0217 Tripterygium wilfordii HOM05D003462 ORTHO05D003946 1.7e-100 370.2 265 75.1
Aqoxy3G00588 Aquilegia oxysepala HOM05D003462 ORTHO05D003946 2.2e-100 369.8 265 73.2
Peaxi162Scf00017g03131 Petunia axillaris HOM05D003462 ORTHO05D003946 3.7e-100 369.0 265 74.3
Glyma.17G082700 Glycine max HOM05D003462 ORTHO05D003946 6.3e-100 368.2 265 74.0
Potri.015G047500 Populus trichocarpa HOM05D003462 ORTHO05D003946 6.3e-100 368.2 263 74.5
Lalb_Chr23g0274061 Lupinus albus HOM05D003462 ORTHO05D003946 1.1e-99 367.5 265 74.0
CAN.G982.30 Capsicum annuum HOM05D003462 ORTHO05D003946 1.8e-99 366.7 265 74.0
AUR62044517 Chenopodium quinoa HOM05D003462 ORTHO05D003946 2.4e-99 366.3 262 72.9
Hund02540 Selenicereus undatus HOM05D003462 ORTHO05D003946 3.1e-99 365.9 265 73.2
Phvul.003G181400 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 5.3e-99 365.2 265 72.8
TPR.G2020 Trifolium pratense HOM05D003462 ORTHO05D003946 5.3e-99 365.2 265 72.5
CANSAT80G0024 Cannabis sativa HOM05D003462 ORTHO05D003946 6.9e-99 364.8 265 71.7
MELO3C017261.2 Cucumis melo HOM05D003462 ORTHO05D003946 6.9e-99 364.8 265 72.1
CSS0035896 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.2e-98 364.0 222 88.7
COL.COLO4_28809 Corchorus olitorius HOM05D003462 ORTHO05D003946 1.2e-98 364.0 301 66.1
MD06G1207100 Malus domestica HOM05D003462 ORTHO05D003946 2.0e-98 363.2 265 72.1
Ca_21746_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 3.4e-98 362.5 265 71.7
AUR62032156 Chenopodium quinoa HOM05D003462 ORTHO05D003946 4.5e-98 362.1 265 72.1
arahy.Tifrunner.gnm1.ann1.8883SE Arachis hypogaea HOM05D003462 ORTHO05D003946 5.9e-98 361.7 265 70.9
arahy.Tifrunner.gnm1.ann1.HJ4MYC Arachis hypogaea HOM05D003462 ORTHO05D003946 5.9e-98 361.7 265 70.9
Medtr4g112860 Medicago truncatula HOM05D003462 ORTHO05D003946 7.7e-98 361.3 266 71.4
HanXRQChr05g0157841 Helianthus annuus HOM05D003462 ORTHO05D003946 1.0e-97 360.9 265 70.9
EL10Ac5g11203 Beta vulgaris HOM05D003462 ORTHO05D003946 5.0e-97 358.6 283 68.9
VMungo1215G0716 Vigna mungo HOM05D003462 ORTHO05D003946 6.5e-97 358.2 265 71.7
Sc24g0002690 Simmondsia chinensis HOM05D003462 ORTHO05D003946 2.5e-96 356.3 265 70.6
Lalb_Chr12g0197421 Lupinus albus HOM05D003462 ORTHO05D003946 3.2e-96 355.9 265 69.8
Glyma.04G158100 Glycine max HOM05D003462 ORTHO05D003946 2.1e-95 353.2 265 71.3
Phvul.009G204100 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 3.6e-95 352.4 265 69.8
Lsat_1_v5_gn_5_24441 Lactuca sativa HOM05D003462 ORTHO05D003946 1.4e-94 350.5 265 68.3
Medtr2g058970 Medicago truncatula HOM05D003462 ORTHO05D003946 1.4e-94 350.5 265 70.9
Psat1g028640 Pisum sativum HOM05D003462 ORTHO05D003946 2.3e-94 349.7 265 70.2
MSTRG.4505 Avicennia marina HOM05D003462 ORTHO05D003946 3.9e-94 349.0 265 71.3
HPP92_017961 Vanilla planifolia HOM05D003462 ORTHO05D003946 3.9e-94 349.0 265 67.9
Eucgr.K02831 Eucalyptus grandis HOM05D003462 ORTHO05D003946 4.4e-93 345.5 266 68.4
Glyma.06G207100 Glycine max HOM05D003462 ORTHO05D003946 4.4e-93 345.5 265 69.8
Ca_02712_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 5.7e-93 345.1 265 70.9
SalBow1G8183 Salvia bowleyana HOM05D003462 ORTHO05D003946 9.7e-93 344.4 265 69.8
CDE06G1115 Ceratophyllum demersum HOM05D003462 ORTHO05D003946 1.3e-92 344.0 266 68.8
Haze_18545 Corylus avellana HOM05D003462 ORTHO05D003946 1.3e-92 344.0 342 57.9
Sabra15G0079500 Salix brachista HOM05D003462 ORTHO05D003946 4.8e-92 342.0 316 61.4
THA.LOC104812124 Tarenaya hassleriana HOM05D003462 ORTHO05D003946 6.3e-92 341.7 265 68.7
Migut.D01481 Erythranthe guttata HOM05D003462 ORTHO05D003946 7.0e-91 338.2 265 68.7
Actinidia18966 Actinidia chinensis HOM05D003462 ORTHO05D003946 9.1e-91 337.8 254 72.8
Aa31LG4G4310 Aethionema arabicum HOM05D003462 ORTHO05D003946 2.6e-90 336.3 265 67.9
Carub.0002s2077 Capsella rubella HOM05D003462 ORTHO05D003946 4.5e-90 335.5 265 67.5
AL2G33830 Arabidopsis lyrata HOM05D003462 ORTHO05D003946 5.9e-90 335.1 265 67.5
Thhalv10018225m.g Eutrema salsugineum HOM05D003462 ORTHO05D003946 1.3e-89 334.0 265 67.2
A07p39860 Brassica napus HOM05D003462 ORTHO05D003946 2.2e-89 333.2 265 66.8
BraA07t31532Z Brassica rapa HOM05D003462 ORTHO05D003946 2.2e-89 333.2 265 66.8
MSTRG.9572 Avicennia marina HOM05D003462 ORTHO05D003946 2.9e-89 332.8 265 67.2
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 2.9e-89 332.8 265 66.8
BolC6t39846H Brassica oleracea HOM05D003462 ORTHO05D003946 2.9e-89 332.8 265 66.8
BcaC08g46829 Brassica carinata HOM05D003462 ORTHO05D003946 3.8e-89 332.4 265 67.2
AT1G73990 Arabidopsis thaliana HOM05D003462 ORTHO05D003946 5.0e-89 332.0 265 66.4
Sp5g29190 Schrenkiella parvula HOM05D003462 ORTHO05D003946 8.5e-89 331.3 265 67.5
ECA246G0130 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.6e-87 327.0 238 72.3
Zm00001eb189850 Zea mays HOM05D003462 ORTHO05D003946 2.7e-87 326.2 267 64.8
CARHR067120 Cardamine hirsuta HOM05D003462 ORTHO05D003946 3.6e-87 325.9 265 65.7
TPR.G15309 Trifolium pratense HOM05D003462 ORTHO05D003946 2.3e-86 323.2 265 65.3
SalBow1G4644 Salvia bowleyana HOM05D003462 ORTHO05D003946 5.2e-86 322.0 262 64.5
Migut.D01480 Erythranthe guttata HOM05D003462 ORTHO05D003946 6.7e-86 321.6 262 66.0
ATR0691G062 Amborella trichopoda HOM05D003462 ORTHO05D003946 1.5e-85 320.5 263 65.0
Oeu031926.1 Olea europaea HOM05D003462 ORTHO05D003946 2.6e-85 319.7 239 72.4
CSS0030762 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.7e-84 315.8 230 76.5
SEGI_03657 Sequoiadendron giganteum HOM05D003462 ORTHO05D003946 3.7e-84 315.8 268 66.8
Hund09973 Selenicereus undatus HOM05D003462 ORTHO05D003946 3.1e-83 312.8 265 64.2
Dinv38623 Davidia involucrata HOM05D003462 ORTHO05D003946 1.2e-82 310.8 251 66.5
ATR0691G201 Amborella trichopoda HOM05D003462 ORTHO05D003946 3.5e-82 309.3 262 65.3
arahy.Tifrunner.gnm1.ann1.MSU6B8 Arachis hypogaea HOM05D003462 ORTHO05D003946 4.5e-82 308.9 242 68.2
arahy.Tifrunner.gnm1.ann1.V9YTQ9 Arachis hypogaea HOM05D003462 ORTHO05D003946 5.9e-82 308.5 242 68.2
FAN08G2364 Fragaria x ananassa HOM05D003462 ORTHO05D003946 4.2e-80 302.4 265 64.5
ECA246G4431 Erigeron canadensis HOM05D003462 ORTHO05D003946 2.7e-79 299.7 268 63.8
unitig_22.g6154 Utricularia gibba HOM05D003462 ORTHO05D003946 6.8e-78 295.0 207 76.3
HanXRQChr05g0157891 Helianthus annuus HOM05D003462 ORTHO05D003946 8.8e-78 294.7 265 60.8
Nitab4.5_0000646g0270 Nicotiana tabacum HOM05D003462 ORTHO05D003946 1.2e-77 294.3 265 64.2
SGA_v2.0_scaffold171G38939 Striga asiatica HOM05D003462 ORTHO05D003946 1.5e-77 293.9 265 63.0
Nitab4.5_0002805g0140 Nicotiana tabacum HOM05D003462 ORTHO05D003946 2.6e-77 293.1 185 83.2
AUR62036912 Chenopodium quinoa HOM05D003462 ORTHO05D003946 9.7e-77 291.2 182 82.4
Lsat_1_v5_gn_5_24760 Lactuca sativa HOM05D003462 ORTHO05D003946 2.2e-76 290.0 267 62.2
Lsat_1_v5_gn_5_24941 Lactuca sativa HOM05D003462 ORTHO05D003946 2.8e-76 289.7 267 61.8
Lj1g0015888 Lotus japonicus HOM05D003462 ORTHO05D003946 5.3e-75 285.4 185 81.1
SMO147G0360 Selaginella moellendorffii HOM05D003462 ORTHO05D003946 2.9e-73 279.6 241 65.1
QL10p021433 Quercus lobata HOM05D003462 ORTHO05D003946 1.5e-72 277.3 185 78.4
Actinidia01422 Actinidia chinensis HOM05D003462 ORTHO05D003946 4.0e-70 269.2 206 72.3
AagrBONN_evm.TU.Sc2ySwM_117.3359 Anthoceros agrestis HOM05D003462 ORTHO05D003946 9.8e-69 264.6 236 64.0
Mapoly0008s0093 Marchantia polymorpha HOM05D003462 ORTHO05D003946 1.8e-67 260.4 196 69.4
CSS0043461 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 5.9e-66 255.4 218 67.9
Duzib205G0774 Durio zibethinus HOM05D003462 ORTHO05D003946 7.7e-66 255.0 204 67.2
Pp3c3_13550 Physcomitrium patens HOM05D003462 ORTHO05D003946 1.0e-65 254.6 196 69.9
Pp3c3_13555 Physcomitrium patens HOM05D003462 ORTHO05D003946 1.0e-65 254.6 196 69.9
AagrBONN_evm.TU.Sc2ySwM_368.89 Anthoceros agrestis HOM05D003462 ORTHO05D003946 2.8e-60 236.5 238 58.0
Prupe.5G211500 Prunus persica HOM05D003462 ORTHO05D003946 6.3e-60 235.3 143 83.2
Medtr4g112820 Medicago truncatula HOM05D003462 ORTHO05D003946 2.3e-57 226.9 185 67.6
Cre10.g444550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 5.6e-56 222.2 199 61.8
unitig_749.g14105 Utricularia gibba HOM05D003462 ORTHO05D003946 2.0e-53 213.8 140 77.1
CsaV3_1G003220 Cucumis sativus L. HOM05D003462 ORTHO05D003946 3.9e-49 199.5 113 89.4
RcHm_v2.0_Chr7g0184031 Rosa chinensis HOM05D003462 ORTHO05D003946 1.5e-48 197.6 184 62.0
Actinidia27195 Actinidia chinensis HOM05D003462 ORTHO05D003946 2.9e-44 183.3 205 56.1
Medtr4g134260 Medicago truncatula HOM05D003462 ORTHO05D003946 3.7e-44 183.0 208 52.4
FAN18G1391 Fragaria x ananassa HOM05D003462 ORTHO05D003946 4.9e-44 182.6 173 60.7
FAN13G0008 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.1e-43 181.4 118 79.7
Psat4g045480 Pisum sativum HOM05D003462 ORTHO05D003946 3.2e-43 179.9 110 80.9
Medtr8g022500 Medicago truncatula HOM05D003462 ORTHO05D003946 1.6e-42 177.6 200 56.0
Os02g0728100 Oryza sativa ssp. japonica HOM05D003462 ORTHO05D003946 1.9e-40 170.6 111 77.5
RcHm_v2.0_Chr2g0126491 Rosa chinensis HOM05D003462 ORTHO05D003946 2.8e-39 166.8 201 53.7
Cc00_g05440 Coffea canephora HOM05D003462 ORTHO05D003946 6.2e-39 165.6 208 48.6
GSVIVG01008177001 Vitis vinifera HOM05D003462 ORTHO05D003946 8.1e-39 165.2 107 81.3
HanXRQChr09g0240811 Helianthus annuus HOM05D003462 ORTHO05D003946 1.2e-37 161.4 128 64.8
Rhsim08G0140500 Rhododendron simsii HOM05D003462 ORTHO05D003946 8.3e-36 155.2 106 76.4
HanXRQChr05g0157881 Helianthus annuus HOM05D003462 ORTHO05D003946 4.1e-35 152.9 152 57.9
CBR_g31190 Chara braunii HOM05D003462 ORTHO05D003946 1.7e-33 147.5 99 75.8
PGSC0003DMG401024517 Solanum tuberosum HOM05D003462 ORTHO05D003946 1.7e-33 147.5 120 65.8
AUR62039689 Chenopodium quinoa HOM05D003462 ORTHO05D003946 3.9e-33 146.4 138 60.1
Medtr4g123500 Medicago truncatula HOM05D003462 ORTHO05D003946 3.3e-32 143.3 194 44.8
Cre06.g267700 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 9.6e-32 141.7 184 45.1
Dinv36836 Davidia involucrata HOM05D003462 ORTHO05D003946 1.2e-31 141.4 81 90.1
TPR.G35192 Trifolium pratense HOM05D003462 ORTHO05D003946 1.8e-30 137.5 104 71.2
Cfa017729 Carpinus fangiana HOM05D003462 ORTHO05D003946 5.8e-29 132.5 79 84.8
Medtr8g022470 Medicago truncatula HOM05D003462 ORTHO05D003946 2.2e-28 130.6 195 45.6
HanXRQChr09g0240321 Helianthus annuus HOM05D003462 ORTHO05D003946 4.2e-27 126.3 103 63.1
RcHm_v2.0_Chr6g0264331 Rosa chinensis HOM05D003462 ORTHO05D003946 2.7e-26 123.6 74 85.1
ECA236G4192 Erigeron canadensis HOM05D003462 ORTHO05D003946 3.9e-25 119.8 78 76.9
Medtr5g025810 Medicago truncatula HOM05D003462 ORTHO05D003946 3.9e-25 119.8 225 38.7
Cfa017727 Carpinus fangiana HOM05D003462 ORTHO05D003946 6.6e-25 119.0 110 57.3
Medtr5g082990 Medicago truncatula HOM05D003462 ORTHO05D003946 3.3e-24 116.7 173 43.9
Medtr4g114810 Medicago truncatula HOM05D003462 ORTHO05D003946 4.3e-24 116.3 159 50.3
RcHm_v2.0_Chr2g0152701 Rosa chinensis HOM05D003462 ORTHO05D003946 1.3e-23 114.8 189 43.4
Medtr4g133130 Medicago truncatula HOM05D000348 ORTHO05D003946 2.4e-22 110.5 184 44.0
Ca_29357_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 4.0e-22 109.8 207 34.8
FvH4_5g13112 Fragaria vesca HOM05D003462 ORTHO05D003946 2.0e-21 107.5 143 47.6
COL.COLO4_01124 Corchorus olitorius HOM05D003462 ORTHO05D003946 5.8e-21 105.9 223 36.3
unitig_749.g14106 Utricularia gibba HOM05D003462 ORTHO05D003946 1.1e-19 101.7 119 53.8
Medtr4g130550 Medicago truncatula HOM05D003462 ORTHO05D003946 2.4e-19 100.5 163 38.0
RcHm_v2.0_Chr3g0495421 Rosa chinensis HOM05D003462 ORTHO05D003946 1.3e-17 94.7 113 53.1
Medtr4g130360 Medicago truncatula HOM05D003462 ORTHO05D003946 1.7e-17 94.4 194 35.6
PRCOL_00001689 Prasinoderma coloniale HOM05D003462 ORTHO05D003946 2.5e-16 90.5 210 32.9
Cre06.g251550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 4.3e-16 89.7 186 34.9
ATR0559G066 Amborella trichopoda HOM05D003462 ORTHO05D003946 1.3e-12 78.2 83 51.8
ECA233G4583 Erigeron canadensis HOM05D003462 ORTHO05D003946 2.2e-12 77.4 153 39.2
PRCOL_00006545 Prasinoderma coloniale HOM05D003462 ORTHO05D003946 6.0e-10 69.3 216 28.7
Ca_29346_v3 Cicer arietinum L. HOM05D003462 ORTHO05D034612 6.7e-09 65.9 160 31.2
ECA233G4504 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.5e-08 64.7 41 75.6
Medtr5g083100 Medicago truncatula HOM05D003462 ORTHO05D003946 7.4e-08 62.4 56 58.9
PRCOL_00006673 Prasinoderma coloniale HOM05D003462 ORTHO05D034612 2.1e-07 60.8 166 26.5
MCO10G272 Micromonas commoda HOM05D003462 ORTHO05D034612 5.3e-06 56.2 166 27.1


User provided reference genes

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