Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 5.3e-44 180.6 92 100.0
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.5e-27 124.8 72 88.9
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.5e-26 120.6 72 87.5
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.5e-25 118.6 97 69.1
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.5e-25 118.6 97 69.1
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 1.4e-20 102.8 97 60.8
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 7.0e-20 100.5 94 61.7
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.2e-19 99.8 91 58.2
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 7.7e-19 97.1 94 60.6
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.0e-18 96.7 79 67.1
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 1.7e-18 95.9 79 67.1
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 1.7e-18 95.9 83 63.9
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 2.2e-18 95.5 94 58.5
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 3.8e-18 94.7 80 63.8
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 5.0e-18 94.4 93 61.3
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 5.0e-18 94.4 98 57.1
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 5.0e-18 94.4 95 56.8
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 6.5e-18 94.0 93 59.1
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 1.1e-17 93.2 94 58.5
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 1.1e-17 93.2 94 58.5
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 1.1e-17 93.2 94 58.5
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.1e-17 93.2 83 63.9
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 1.9e-17 92.4 79 63.3
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 1.9e-17 92.4 83 57.8
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 2.5e-17 92.0 83 57.8
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 3.2e-17 91.7 94 57.4
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 3.2e-17 91.7 94 57.4
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 3.2e-17 91.7 97 53.6
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 4.2e-17 91.3 97 51.5
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 4.2e-17 91.3 95 56.8
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 5.5e-17 90.9 97 53.6
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 7.2e-17 90.5 97 53.6
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 9.5e-17 90.1 94 55.3
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 9.5e-17 90.1 97 52.6
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 9.5e-17 90.1 97 55.7
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 9.5e-17 90.1 83 57.8
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.6e-16 89.4 90 58.9
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.6e-16 89.4 94 53.2
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.6e-16 89.4 79 60.8
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.6e-16 89.4 79 60.8
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 1.6e-16 89.4 83 59.0
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 2.1e-16 89.0 83 56.6
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 2.1e-16 89.0 81 58.0
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 2.8e-16 88.6 77 58.4
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 3.6e-16 88.2 82 57.3
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 3.6e-16 88.2 83 56.6
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 4.7e-16 87.8 83 57.8
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 4.7e-16 87.8 93 53.8
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 6.1e-16 87.4 96 53.1
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 6.1e-16 87.4 79 58.2
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 6.1e-16 87.4 95 54.7
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 6.1e-16 87.4 97 51.5
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 8.0e-16 87.0 94 53.2
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 8.0e-16 87.0 76 59.2
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 8.0e-16 87.0 79 58.2
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 1.0e-15 86.7 89 58.4
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.0e-15 86.7 97 50.5
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 1.4e-15 86.3 83 54.2
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 2.3e-15 85.5 93 50.5
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 2.3e-15 85.5 81 55.6
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 2.3e-15 85.5 95 53.7
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.3e-15 85.5 95 53.7
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.3e-15 85.5 95 53.7
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 2.3e-15 85.5 90 54.4
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 2.3e-15 85.5 94 53.2
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 3.0e-15 85.1 79 57.0
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 3.0e-15 85.1 78 62.8
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.0e-15 85.1 95 53.7
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 4.0e-15 84.7 97 49.5
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 4.0e-15 84.7 79 58.2
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 4.0e-15 84.7 96 54.2
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 5.2e-15 84.3 91 53.8
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 5.2e-15 84.3 91 53.8
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 5.2e-15 84.3 78 61.5
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 5.2e-15 84.3 96 52.1
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 5.2e-15 84.3 79 57.0
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 1.2e-14 83.2 97 50.5
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.5e-14 82.8 93 48.4
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 2.0e-14 82.4 97 46.4
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 2.0e-14 82.4 93 52.7
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 2.0e-14 82.4 80 53.8
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 2.0e-14 82.4 96 52.1
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 2.6e-14 82.0 97 50.5
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 3.4e-14 81.6 97 47.4
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 3.4e-14 81.6 82 53.7
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 5.7e-14 80.9 97 47.4
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 5.7e-14 80.9 97 47.4
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 9.8e-14 80.1 97 46.4
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 2.2e-13 79.0 95 48.4
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 2.2e-13 79.0 79 59.5
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 2.8e-13 78.6 93 50.5
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 2.8e-13 78.6 82 54.9
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 6.3e-13 77.4 97 46.4
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 1.4e-12 76.3 82 56.1
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 1.8e-12 75.9 93 48.4
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 3.1e-12 75.1 93 50.5
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 9.2e-12 73.6 76 51.3
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 2.0e-11 72.4 86 48.8
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 3.5e-11 71.6 87 48.3
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 7.8e-11 70.5 89 48.3
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 1.1e-09 66.6 70 54.3
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 1.5e-09 66.2 95 44.2
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.6e-08 62.8 88 39.8
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 3.0e-07 58.5 88 38.6
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 4.4e-06 54.7 86 38.4
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.4e-06 54.7 94 36.2
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 7.5e-06 53.9 91 39.6


User provided reference genes

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