Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043066 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 4.4e-127 458.0 234 100.0
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 7.4e-66 254.6 127 100.0
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 4.3e-58 228.8 127 86.6
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 6.3e-57 224.9 128 87.5
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 2.4e-56 223.0 127 84.3
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 6.9e-56 221.5 127 82.7
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 1.5e-55 220.3 127 82.7
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 2.0e-55 219.9 127 81.9
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 2.6e-55 219.5 124 83.1
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 3.4e-55 219.2 127 81.9
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 4.5e-55 218.8 127 81.1
Cpa.g.sc65.87 Carica papaya HOM05D003702 ORTHO05D004653 7.6e-55 218.0 127 81.1
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 7.6e-55 218.0 127 80.3
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.7e-54 216.9 127 81.9
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.7e-54 216.9 127 81.9
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 1.7e-54 216.9 127 81.9
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 2.2e-54 216.5 127 80.3
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 3.8e-54 215.7 127 81.1
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.8e-54 215.7 127 81.1
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.8e-54 215.7 127 81.1
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.8e-54 215.7 127 81.1
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.8e-54 215.7 127 81.1
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.8e-54 215.7 127 81.1
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 3.8e-54 215.7 127 81.1
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 6.5e-54 214.9 127 80.3
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 1.1e-53 214.2 127 80.3
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 1.1e-53 214.2 127 79.5
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 1.1e-53 214.2 127 81.1
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.2e-53 212.6 127 79.5
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 3.2e-53 212.6 127 79.5
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 3.2e-53 212.6 127 79.5
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 4.2e-53 212.2 127 80.3
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 4.2e-53 212.2 127 79.5
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 4.2e-53 212.2 127 78.7
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 4.2e-53 212.2 127 78.7
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 4.2e-53 212.2 127 79.5
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 7.2e-53 211.5 127 78.7
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 7.2e-53 211.5 127 79.5
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 7.2e-53 211.5 127 81.1
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 9.3e-53 211.1 127 80.3
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 1.2e-52 210.7 127 79.5
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 1.6e-52 210.3 127 78.7
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 1.6e-52 210.3 127 79.5
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 1.6e-52 210.3 127 78.0
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 2.1e-52 209.9 127 79.5
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 2.1e-52 209.9 125 78.4
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 2.1e-52 209.9 127 80.3
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 2.7e-52 209.5 127 82.7
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 3.6e-52 209.1 128 80.5
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 3.6e-52 209.1 126 79.4
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 3.6e-52 209.1 127 80.3
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 6.1e-52 208.4 127 79.5
Oeu048389.1 Olea europaea HOM05D003702 ORTHO05D004653 6.1e-52 208.4 127 78.0
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 6.1e-52 208.4 127 79.5
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 7.9e-52 208.0 127 78.0
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 1.0e-51 207.6 121 81.0
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 1.0e-51 207.6 156 67.9
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 1.3e-51 207.2 127 76.4
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 1.8e-51 206.8 127 77.2
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 1.8e-51 206.8 127 75.6
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 2.3e-51 206.5 127 77.2
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 2.3e-51 206.5 127 77.2
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 3.9e-51 205.7 127 78.0
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 6.7e-51 204.9 126 78.6
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 6.7e-51 204.9 127 78.7
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 6.7e-51 204.9 127 78.7
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 1.1e-50 204.1 127 77.2
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 1.5e-50 203.8 127 78.7
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 1.5e-50 203.8 130 75.4
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 1.5e-50 203.8 127 78.0
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.9e-50 203.4 127 77.2
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 3.3e-50 202.6 127 78.7
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 3.3e-50 202.6 127 76.4
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 4.3e-50 202.2 127 76.4
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 4.3e-50 202.2 127 78.0
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 4.3e-50 202.2 127 78.0
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 5.7e-50 201.8 124 78.2
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 5.7e-50 201.8 127 78.0
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 5.7e-50 201.8 127 78.0
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 9.7e-50 201.1 127 75.6
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 1.3e-49 200.7 127 76.4
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 1.3e-49 200.7 127 77.2
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 1.6e-49 200.3 127 77.2
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 1.6e-49 200.3 127 78.7
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 2.8e-49 199.5 130 76.2
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 3.7e-49 199.1 120 79.2
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 3.7e-49 199.1 127 77.2
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 4.8e-49 198.7 127 78.0
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 8.2e-49 198.0 127 74.8
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 8.2e-49 198.0 127 74.0
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 1.8e-48 196.8 127 74.8
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.4e-48 196.4 127 77.2
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 2.4e-48 196.4 130 76.2
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 3.1e-48 196.1 127 75.6
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 3.1e-48 196.1 127 74.0
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 3.1e-48 196.1 127 74.0
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 3.1e-48 196.1 127 74.0
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 4.1e-48 195.7 127 74.0
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 4.1e-48 195.7 129 76.7
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.1e-48 195.7 127 73.2
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 4.1e-48 195.7 128 75.0
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 5.3e-48 195.3 130 76.9
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 5.3e-48 195.3 127 75.6
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 6.9e-48 194.9 109 83.5
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 6.9e-48 194.9 127 74.8
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 6.9e-48 194.9 127 77.2
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 9.1e-48 194.5 131 71.0
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 1.5e-47 193.7 127 73.2
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 2.0e-47 193.4 127 75.6
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 2.6e-47 193.0 131 75.6
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 2.6e-47 193.0 127 70.9
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 3.4e-47 192.6 127 73.2
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 3.4e-47 192.6 131 70.2
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 3.4e-47 192.6 127 72.4
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 4.5e-47 192.2 127 76.4
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 5.9e-47 191.8 144 68.8
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 7.7e-47 191.4 127 74.0
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 7.7e-47 191.4 127 72.4
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 1.0e-46 191.0 128 75.0
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 1.0e-46 191.0 127 72.4
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 1.3e-46 190.7 128 74.2
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 2.2e-46 189.9 128 74.2
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 2.2e-46 189.9 128 74.2
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 2.2e-46 189.9 160 62.5
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 2.2e-46 189.9 127 74.0
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 2.9e-46 189.5 127 71.7
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 6.5e-46 188.3 127 75.6
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 8.5e-46 188.0 127 75.6
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 1.4e-45 187.2 160 61.9
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 1.9e-45 186.8 129 72.9
SEGI_02132 Sequoiadendron giganteum HOM05D003702 ORTHO05D004653 2.5e-45 186.4 128 73.4
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 2.5e-45 186.4 127 67.7
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 1.2e-44 184.1 127 71.7
Os01g0118300 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 1.6e-44 183.7 127 72.4
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 3.6e-44 182.6 127 73.2
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 3.6e-44 182.6 127 73.2
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 3.6e-44 182.6 127 73.2
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 7.9e-44 181.4 160 60.0
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 1.0e-43 181.0 160 60.6
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 3.9e-43 179.1 121 72.7
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 5.1e-43 178.7 119 71.4
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 2.6e-42 176.4 127 71.7
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 7.4e-42 174.9 160 59.4
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 7.4e-42 174.9 99 80.8
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.1e-40 171.0 127 64.6
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 2.9e-38 162.9 127 67.7
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 4.7e-36 155.6 114 62.3
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 2.6e-34 149.8 128 60.2
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 4.8e-33 145.6 99 68.7
Aqoxy6G00509 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 2.4e-32 143.3 74 91.9
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 2.4e-32 143.3 114 62.3
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 5.5e-29 132.1 129 56.6
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 1.2e-28 131.0 72 86.1
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 1.4e-27 127.5 91 68.1
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.4e-27 127.5 127 52.8
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 8.8e-27 124.8 81 74.1
Zm00001eb367010 Zea mays HOM05D003702 ORTHO05D004653 4.4e-26 122.5 72 77.8
Os01g0683550 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 5.3e-24 115.5 74 70.3
SHI16230 Sapria himalayana HOM05D000105 ORTHO05D000023 2.5e-21 106.7 116 48.3
Zm00001eb335270 Zea mays HOM05D003702 ORTHO05D004653 2.6e-18 96.7 75 65.3
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 2.4e-16 90.1 53 81.1
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 3.1e-16 89.7 46 93.5
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 3.5e-15 86.3 46 91.3
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 7.0e-08 62.0 41 73.2
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 1.2e-07 61.2 32 87.5


User provided reference genes

Program Settings