Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.7e-92 341.3 182 100.0
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.7e-65 253.1 188 76.6
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.7e-65 253.1 188 76.6
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 4.1e-64 248.4 186 74.7
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 2.5e-61 239.2 180 74.4
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 3.6e-60 235.3 187 71.7
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 9.8e-58 227.3 188 69.7
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 1.7e-54 216.5 189 67.2
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.0e-54 215.7 116 98.3
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.6e-52 209.9 182 64.8
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 2.3e-51 206.1 197 62.9
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 8.9e-51 204.1 186 62.9
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.5e-50 203.4 184 64.7
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 2.0e-50 203.0 187 63.1
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.0e-50 203.0 184 64.7
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 2.0e-50 203.0 184 64.7
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 3.4e-50 202.2 202 59.9
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 4.4e-50 201.8 176 66.5
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 5.8e-50 201.4 187 63.6
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 2.2e-49 199.5 182 63.7
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 2.9e-49 199.1 199 60.3
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 2.4e-48 196.1 194 62.4
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 2.4e-48 196.1 181 60.8
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 4.1e-48 195.3 197 62.9
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 4.1e-48 195.3 195 59.5
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 5.4e-48 194.9 192 63.0
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 7.0e-48 194.5 176 61.9
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 1.7e-46 189.9 194 61.3
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 3.0e-46 189.1 196 60.7
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 3.9e-46 188.7 177 61.6
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 5.0e-46 188.3 196 60.2
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 6.6e-46 188.0 182 61.5
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 6.6e-46 188.0 177 61.0
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 8.6e-46 187.6 172 64.0
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 1.1e-45 187.2 182 61.0
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 2.5e-45 186.0 215 55.3
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 7.3e-45 184.5 212 55.7
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 1.2e-44 183.7 186 58.6
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.2e-44 183.7 187 58.3
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 1.6e-44 183.3 186 58.6
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 1.6e-44 183.3 191 57.6
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 2.1e-44 183.0 186 58.1
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 2.1e-44 183.0 201 55.2
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 6.2e-44 181.4 179 61.5
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 8.1e-44 181.0 201 56.7
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 1.8e-43 179.9 147 68.7
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 2.3e-43 179.5 193 57.0
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 3.1e-43 179.1 191 59.2
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 4.0e-43 178.7 201 56.2
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 4.0e-43 178.7 191 58.1
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 1.5e-42 176.8 185 58.9
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 2.0e-42 176.4 196 56.1
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 3.4e-42 175.6 190 57.9
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 4.4e-42 175.3 209 53.6
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.4e-42 175.3 190 56.8
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 7.5e-42 174.5 187 54.5
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 9.8e-42 174.1 184 56.5
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.3e-41 173.7 190 55.8
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.3e-41 173.7 191 56.0
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 1.3e-41 173.7 189 59.3
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 2.2e-41 172.9 191 58.6
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 3.7e-41 172.2 179 57.0
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 6.4e-41 171.4 196 55.6
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 1.1e-40 170.6 182 59.9
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 1.1e-40 170.6 190 57.4
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 2.4e-40 169.5 196 55.1
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 5.4e-40 168.3 178 57.3
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 1.2e-39 167.2 201 52.2
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 1.6e-39 166.8 186 55.9
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 2.1e-39 166.4 201 51.7
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 2.7e-39 166.0 199 51.8
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 3.5e-39 165.6 195 53.3
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 6.0e-39 164.9 206 53.4
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 7.8e-39 164.5 178 55.1
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 1.0e-38 164.1 182 52.2
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 3.0e-38 162.5 190 55.8
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 3.9e-38 162.2 193 52.8
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 6.6e-38 161.4 202 50.0
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 1.5e-37 160.2 203 51.2
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 2.5e-37 159.5 204 49.5
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 3.3e-37 159.1 190 53.7
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 5.6e-37 158.3 180 53.9
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 5.6e-37 158.3 177 54.2
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.2e-36 157.1 180 51.7
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.2e-36 157.1 172 52.3
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.2e-36 157.1 183 54.6
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 1.6e-36 156.8 204 50.5
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 1.6e-36 156.8 175 56.6
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 2.8e-36 156.0 180 53.9
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 2.8e-36 156.0 180 53.9
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 2.8e-36 156.0 176 56.2
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 2.8e-36 156.0 181 53.6
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 3.6e-36 155.6 180 53.3
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 3.6e-36 155.6 180 53.3
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 6.2e-36 154.8 250 45.2
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 2.3e-35 152.9 176 52.3
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 1.5e-34 150.2 184 51.1
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 2.0e-34 149.8 194 49.0
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 2.6e-34 149.4 212 48.6
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 5.8e-34 148.3 190 48.4
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 1.7e-33 146.7 178 49.4
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 3.8e-33 145.6 184 50.5
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 7.1e-32 141.4 174 52.9
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 9.2e-32 141.0 183 50.8
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 1.6e-31 140.2 174 50.6
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 4.6e-31 138.7 180 50.0
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 1.0e-30 137.5 147 59.2
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 1.3e-30 137.1 179 48.0
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 2.3e-30 136.3 246 41.9
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 2.3e-30 136.3 246 41.9
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 3.0e-30 136.0 174 52.3
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 3.0e-30 136.0 174 52.3
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 5.6e-29 131.7 197 44.7
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 1.1e-27 127.5 153 54.9
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 2.4e-27 126.3 67 98.5
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 3.1e-27 125.9 146 55.5
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.3e-25 120.6 177 42.9
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 3.8e-25 119.0 180 47.8
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 9.3e-24 114.4 170 42.9
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 7.3e-21 104.8 152 50.0
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 9.6e-21 104.4 115 53.0
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.8e-20 102.8 108 57.4
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 1.8e-19 100.1 154 45.5
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 2.4e-19 99.8 124 54.0
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 2.0e-18 96.7 173 38.7
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.1e-16 90.9 181 42.5
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 3.2e-16 89.4 163 34.4
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 3.0e-14 82.8 182 34.1
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 6.2e-12 75.1 167 37.1
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 4.0e-11 72.4 167 30.5
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.2e-10 70.9 105 41.0
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 2.2e-09 66.6 118 40.7


User provided reference genes

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