Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 0.0e+00 1211.1 612 100.0
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 0.0e+00 1206.4 612 99.5
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.3e-206 722.2 618 64.6
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 2.7e-200 702.6 617 61.6
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 8.1e-197 691.0 618 61.0
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.1e-196 689.1 581 65.1
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 4.6e-192 675.2 614 61.1
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 2.0e-155 553.5 618 52.4
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.5e-142 510.8 405 68.4
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 9.4e-137 491.5 617 49.9
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 6.7e-135 485.3 608 48.4
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 8.8e-135 485.0 623 47.7
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 7.4e-134 481.9 620 48.5
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 1.6e-128 464.2 620 47.4
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.8e-127 460.7 628 45.7
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 3.0e-127 459.9 615 47.5
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.4e-126 455.3 616 46.4
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.3e-125 454.5 616 46.6
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 1.7e-125 454.1 624 46.3
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.4e-124 450.3 616 46.4
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.1e-121 441.4 505 52.1
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.4e-119 434.5 591 46.9
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 4.0e-119 433.0 618 43.7
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 5.2e-119 432.6 618 44.5
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.0e-118 430.6 619 44.4
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.3e-117 427.9 617 43.1
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 2.2e-117 427.2 617 43.1
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 6.3e-117 425.6 603 42.5
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 1.1e-116 424.9 624 43.4
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.4e-116 424.5 618 44.5
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.8e-116 424.1 632 42.7
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 2.7e-115 420.2 601 43.4
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 3.5e-115 419.9 606 44.1
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 3.5e-115 419.9 569 45.2
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 5.9e-115 419.1 608 43.3
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 5.0e-114 416.0 609 44.2
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 1.1e-113 414.8 618 42.7
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.5e-113 413.7 615 43.6
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 5.5e-113 412.5 615 41.5
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 7.2e-113 412.1 616 42.0
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 1.2e-112 411.4 601 41.4
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 4.0e-111 406.4 640 42.0
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 9.8e-110 401.7 591 43.3
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 1.3e-109 401.4 601 40.8
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 4.8e-109 399.4 589 43.3
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 1.1e-108 398.3 618 41.9
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 1.3e-106 391.3 548 46.0
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 1.3e-106 391.3 615 42.4
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 8.6e-106 388.7 618 41.4
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 1.9e-105 387.5 594 41.9
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 9.5e-105 385.2 593 41.8
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 2.1e-104 384.0 599 41.2
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 4.7e-104 382.9 609 41.1
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 2.3e-103 380.6 593 41.7
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 4.0e-103 379.8 593 41.7
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 5.2e-103 379.4 424 52.8
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.2e-102 378.3 597 40.4
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 1.5e-102 377.9 597 42.0
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 2.8e-101 373.6 606 41.9
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 7.0e-100 369.0 612 41.3
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 2.0e-99 367.5 598 39.5
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 3.5e-99 366.7 596 40.4
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 2.9e-98 363.6 600 41.0
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 7.3e-97 359.0 593 40.5
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.6e-96 357.8 592 41.2
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 2.1e-96 357.5 608 38.3
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 1.0e-95 355.1 600 40.2
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 1.8e-95 354.4 611 39.0
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.2e-94 351.7 626 37.5
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 5.8e-94 349.4 595 39.5
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 7.5e-94 349.0 603 38.8
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 7.5e-94 349.0 617 38.6
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.7e-93 347.8 622 40.4
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 3.7e-93 346.7 592 40.7
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 8.3e-93 345.5 618 38.3
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.1e-92 345.1 596 40.1
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 7.0e-92 342.4 600 39.7
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 6.0e-91 339.3 377 51.5
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 7.8e-91 339.0 593 38.6
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 3.0e-90 337.0 605 36.2
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.8e-87 327.8 674 35.8
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 2.0e-86 324.3 629 37.7
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 8.3e-85 318.9 378 50.5
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 1.2e-83 315.1 636 38.2
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.7e-83 313.9 393 48.9
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 6.0e-83 312.8 611 37.2
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 6.6e-82 309.3 447 43.6
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 5.6e-81 306.2 601 36.6
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 6.2e-80 302.8 606 36.6
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 6.2e-80 302.8 593 36.4
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.4e-79 301.6 376 48.9
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 4.4e-78 296.6 620 36.8
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 7.5e-78 295.8 590 32.9
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.1e-76 292.0 592 34.8
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 5.4e-76 289.7 610 34.8
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 5.4e-76 289.7 584 32.7
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 2.7e-75 287.3 595 35.0
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 3.5e-75 287.0 359 46.8
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 7.8e-75 285.8 610 34.1
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 2.3e-74 284.3 590 32.9
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 2.3e-74 284.3 584 33.4
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 3.0e-74 283.9 592 32.8
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 8.6e-74 282.3 591 34.7
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 1.9e-73 281.2 592 32.4
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 1.9e-73 281.2 592 32.4
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 2.5e-73 280.8 590 31.9
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 3.3e-73 280.4 601 35.6
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 5.6e-73 279.6 592 32.8
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 4.0e-71 273.5 593 32.2
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 6.8e-71 272.7 584 33.0
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 6.8e-71 272.7 370 47.3
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 5.8e-70 269.6 596 33.4
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 8.4e-69 265.8 594 34.2
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 4.1e-68 263.5 593 34.6
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 7.1e-68 262.7 589 34.5
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 9.2e-68 262.3 591 34.9
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.3e-66 258.5 603 34.0
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 3.0e-66 257.3 590 31.5
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 3.0e-66 257.3 589 34.0
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 3.4e-62 243.8 535 31.4
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 1.7e-61 241.5 618 32.5
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 4.9e-61 240.0 220 58.6
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 1.1e-60 238.8 300 48.7
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 2.4e-60 237.7 551 34.3
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 5.3e-55 219.9 245 49.0
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 1.2e-54 218.8 622 30.2
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.0e-54 218.0 524 34.0
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 2.4e-52 211.1 619 30.4
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 3.0e-50 204.1 622 29.6
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.2e-43 182.2 142 65.5
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 3.7e-40 170.6 343 36.2
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 8.2e-32 142.9 587 27.1
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 8.5e-29 132.9 686 25.9
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 7.9e-27 126.3 103 57.3
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 5.9e-14 83.6 384 25.3
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 6.3e-08 63.5 463 22.7


User provided reference genes

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