Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.2e-97 358.6 209 100.0
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.8e-82 308.5 201 92.5
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 3.6e-56 222.2 216 54.6
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 8.6e-50 201.1 223 56.1
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.1e-49 200.7 225 55.1
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.6e-48 195.7 212 51.9
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 3.1e-47 192.6 232 61.2
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 6.8e-47 191.4 228 49.6
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 4.9e-45 185.3 221 48.0
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 2.4e-44 183.0 219 57.5
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 9.2e-44 181.0 230 47.4
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 3.5e-43 179.1 221 46.6
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 4.6e-43 178.7 223 57.8
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.6e-43 178.7 217 55.8
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 3.0e-42 176.0 227 47.1
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 5.1e-42 175.3 232 51.3
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 8.7e-42 174.5 225 47.1
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.9e-41 173.3 230 45.7
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.9e-41 173.3 213 49.3
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 2.5e-41 172.9 227 44.9
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 2.5e-41 172.9 228 44.7
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.3e-41 172.6 226 46.9
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.3e-41 172.6 226 46.9
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 3.3e-41 172.6 234 44.0
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 3.3e-41 172.6 234 44.0
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.3e-41 172.2 221 53.4
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.3e-41 171.4 217 47.9
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.3e-40 170.6 234 45.7
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.3e-40 170.6 244 43.4
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 1.6e-40 170.2 219 45.7
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.6e-40 170.2 223 46.2
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.6e-40 170.2 216 45.8
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 2.1e-40 169.9 234 49.6
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 8.1e-40 167.9 225 46.2
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 8.1e-40 167.9 220 47.3
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 2.4e-39 166.4 247 42.5
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 3.1e-39 166.0 216 44.9
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.3e-39 165.2 219 52.1
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.3e-39 165.2 219 52.1
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.3e-39 165.2 247 42.5
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 6.9e-39 164.9 223 57.4
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 9.0e-39 164.5 236 43.2
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 9.0e-39 164.5 214 49.5
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 9.0e-39 164.5 249 41.8
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.2e-38 164.1 220 44.5
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.4e-38 162.5 232 53.9
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.4e-38 162.2 232 44.0
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 1.7e-37 160.2 220 43.2
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 2.9e-37 159.5 227 43.6
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 2.9e-37 159.5 251 41.4
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 6.4e-37 158.3 215 50.2
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-36 157.5 221 41.2
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 3.2e-36 156.0 234 43.2
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.2e-36 156.0 232 53.4
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 4.2e-36 155.6 206 42.7
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 5.4e-36 155.2 205 44.4
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.4e-36 155.2 219 50.2
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 9.3e-36 154.5 220 42.7
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.2e-35 154.1 233 51.5
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.7e-35 152.9 219 43.4
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.0e-34 151.0 239 40.2
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.0e-34 151.0 253 45.1
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 1.3e-34 150.6 235 40.9
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 3.0e-34 149.4 224 42.4
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 5.1e-34 148.7 237 39.2
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.5e-33 147.1 239 47.7
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 1.5e-33 147.1 229 44.1
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.5e-33 147.1 224 42.0
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.5e-33 146.4 144 54.2
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.6e-33 145.2 223 40.4
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 9.6e-33 144.4 140 54.3
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.3e-32 144.1 223 54.7
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.6e-32 143.7 222 38.7
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.6e-32 142.5 232 40.1
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 6.2e-32 141.7 232 39.7
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 8.1e-32 141.4 219 42.9
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 8.1e-32 141.4 214 45.8
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.1e-31 141.0 230 40.4
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.4e-31 140.6 232 39.7
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 2.4e-31 139.8 219 41.6
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.1e-31 139.4 235 40.4
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 3.4e-30 136.0 225 43.6
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.5e-30 135.6 232 37.9
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 9.9e-30 134.4 203 42.9
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 2.2e-29 133.3 239 44.8
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 3.8e-29 132.5 216 38.0
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 7.1e-28 128.3 201 40.8
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 7.1e-28 128.3 236 37.3
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 7.1e-28 128.3 210 41.0
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 9.3e-28 127.9 235 38.3
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.6e-27 127.1 238 36.6
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.5e-27 125.9 236 37.7
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 3.5e-27 125.9 193 40.4
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 4.6e-27 125.6 230 36.1
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 7.9e-27 124.8 235 35.3
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 2.3e-26 123.2 211 37.9
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.5e-25 119.8 222 38.3
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 5.6e-25 118.6 209 38.3
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.6e-24 117.1 226 38.1
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 6.2e-24 115.2 117 53.8
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 8.1e-24 114.8 228 39.0
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 8.1e-24 114.8 209 35.4
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.2e-22 110.9 228 35.5
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.2e-22 110.9 248 40.3
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 2.0e-22 110.2 227 35.2
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.0e-21 107.8 209 38.3
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 1.3e-21 107.5 216 35.6
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 1.3e-21 107.5 218 36.2
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 1.3e-21 107.5 216 35.6
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 1.3e-21 107.5 216 35.6
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 1.3e-21 107.5 218 36.2
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.3e-21 107.5 219 37.4
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 6.5e-21 105.1 225 35.6
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.4e-20 104.0 217 34.6
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.4e-20 104.0 217 34.6
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.9e-20 103.6 231 34.6
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 2.5e-20 103.2 217 35.5
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 2.5e-20 103.2 211 36.5
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 2.5e-20 103.2 211 36.5
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 3.2e-20 102.8 222 34.7
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.1e-19 100.1 210 37.1
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.1e-19 100.1 147 45.6
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 2.7e-19 99.8 212 34.9
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 3.5e-19 99.4 247 38.5
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 3.5e-19 99.4 213 34.3
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 4.6e-19 99.0 228 34.2
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 4.6e-19 99.0 207 33.3
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 4.6e-19 99.0 228 36.4
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 6.0e-19 98.6 231 45.9
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 7.9e-19 98.2 214 33.6
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.0e-18 97.8 222 32.9
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.3e-18 96.7 193 40.9
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.3e-17 92.8 230 33.0
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 3.3e-17 92.8 210 36.2
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 3.3e-17 92.8 187 40.6
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.3e-17 92.4 132 39.4
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 7.4e-17 91.7 104 49.0
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 1.8e-15 87.0 107 47.7
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.8e-15 87.0 128 43.0
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 5.3e-15 85.5 132 38.6
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.3e-15 85.5 104 47.1
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 5.3e-15 85.5 107 45.8
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.3e-13 80.9 200 37.5
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.9e-12 77.0 104 44.2
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 5.5e-12 75.5 126 38.9
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 7.1e-12 75.1 122 38.5
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 7.9e-11 71.6 146 33.6
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 2.3e-10 70.1 81 44.4
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 8.2e-08 61.6 120 38.3
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.8e-07 60.5 85 41.2
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 5.9e-06 55.5 88 39.8
CSS0009789 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 7.7e-06 55.1 118 33.9
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.0e-05 54.7 176 30.1


User provided reference genes

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