Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 8.0e-139 497.3 285 100.0
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 7.1e-63 245.0 283 53.4
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 2.3e-61 240.0 284 49.6
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 6.9e-58 228.4 289 57.1
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 9.9e-57 224.6 295 49.2
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 8.4e-56 221.5 289 49.8
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 2.5e-55 219.9 279 47.7
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 1.1e-50 204.5 283 49.8
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.3e-45 186.8 309 43.7
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.1e-44 184.5 309 43.0
Actinidia11245 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.9e-44 183.7 283 43.8
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 1.9e-39 167.2 272 41.5
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 3.0e-37 159.8 284 40.5
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 2.0e-36 157.1 262 42.0
Actinidia05297 Actinidia chinensis HOM05D004206 ORTHO05D003325 7.4e-36 155.2 174 52.9
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.7e-35 154.1 282 40.8
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 8.8e-29 131.7 272 38.6
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 3.3e-28 129.8 268 36.2
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 9.7e-28 128.3 289 34.3
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 1.1e-26 124.8 277 42.2
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 4.1e-26 122.9 293 35.8
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 5.3e-26 122.5 282 35.1
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 7.0e-26 122.1 275 35.6
ECA233G2126 Erigeron canadensis HOM05D004206 ORTHO05D003325 9.1e-26 121.7 281 32.7
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 4.5e-25 119.4 269 39.4
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 1.3e-24 117.9 192 49.0
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.3e-24 117.9 263 36.9
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 1.3e-24 117.9 265 41.5
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 1.7e-24 117.5 200 47.0
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 1.4e-23 114.4 275 36.7
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 1.9e-23 114.0 275 39.3
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 1.9e-23 114.0 261 38.7
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 4.2e-23 112.8 256 44.9
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 4.2e-23 112.8 232 36.2
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 4.2e-23 112.8 266 40.6
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 1.6e-22 110.9 272 38.2
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 2.7e-22 110.2 247 38.1
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 2.7e-22 110.2 198 49.5
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 6.1e-22 109.0 273 36.6
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 8.0e-22 108.6 201 38.3
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 1.0e-21 108.2 266 40.2
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 1.4e-21 107.8 196 49.5
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.4e-21 107.8 197 48.2
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.4e-21 107.8 260 40.0
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 2.3e-21 107.1 160 45.6
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 3.0e-21 106.7 248 34.3
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 3.0e-21 106.7 198 50.5
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 3.9e-21 106.3 201 37.8
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 3.9e-21 106.3 272 40.1
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 5.2e-21 105.9 158 58.2
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 5.2e-21 105.9 229 37.1
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 6.7e-21 105.5 253 33.6
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 8.8e-21 105.1 257 43.2
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 1.1e-20 104.8 204 37.7
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 1.5e-20 104.4 263 39.9
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 2.6e-20 103.6 257 39.7
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 5.7e-20 102.4 260 35.8
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 5.7e-20 102.4 274 33.2
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 5.7e-20 102.4 228 34.2
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 7.4e-20 102.1 301 44.2
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 9.7e-20 101.7 150 53.3
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 9.7e-20 101.7 270 40.0
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 1.3e-19 101.3 259 37.1
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 3.7e-19 99.8 148 46.6
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 4.8e-19 99.4 203 37.4
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 1.1e-18 98.2 244 41.0
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.8e-18 97.4 200 38.5
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.4e-18 97.1 194 36.1
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 4.1e-18 96.3 194 42.8
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 4.1e-18 96.3 281 28.8
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 4.1e-18 96.3 186 49.5
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 4.1e-18 96.3 148 45.3
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 5.3e-18 95.9 268 39.2
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 7.0e-18 95.5 268 38.1
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 7.0e-18 95.5 194 42.8
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 9.1e-18 95.1 290 31.4
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.2e-17 94.7 272 32.4
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 1.2e-17 94.7 177 46.9
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 1.2e-17 94.7 177 46.9
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 1.6e-17 94.4 144 60.4
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 1.6e-17 94.4 142 59.9
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.6e-17 94.4 270 36.3
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 3.5e-17 93.2 257 31.1
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 3.5e-17 93.2 256 37.1
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 3.5e-17 93.2 275 33.5
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 4.5e-17 92.8 294 33.7
Dinv37205 Davidia involucrata HOM05D004206 ORTHO05D003325 5.9e-17 92.4 111 45.0
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 5.9e-17 92.4 297 27.9
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 7.7e-17 92.0 274 32.5
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 1.0e-16 91.7 157 40.1
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 1.0e-16 91.7 170 44.7
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 1.0e-16 91.7 278 36.7
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 1.7e-16 90.9 297 28.3
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 2.2e-16 90.5 243 35.4
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 2.9e-16 90.1 281 34.5
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 3.8e-16 89.7 282 31.6
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 5.0e-16 89.4 174 39.7
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 8.5e-16 88.6 257 31.1
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 1.5e-15 87.8 266 28.6
MSTRG.26756 Avicennia marina HOM05D004206 ORTHO05D003325 4.2e-15 86.3 138 41.3
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 4.2e-15 86.3 206 40.8
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 9.4e-15 85.1 156 39.1
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 9.4e-15 85.1 265 30.9
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 9.4e-15 85.1 216 32.9
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 2.1e-14 84.0 258 39.5
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 3.6e-14 83.2 284 27.8
ECA248G2846 Erigeron canadensis HOM05D004206 ORTHO05D003325 6.1e-14 82.4 152 40.1
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 8.0e-14 82.0 162 38.3
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 1.4e-13 81.3 178 42.1
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 1.8e-13 80.9 259 39.8
MELO3C009278.2 Cucumis melo HOM05D004206 ORTHO05D003325 2.3e-13 80.5 255 37.6
MBI14_g07165_MAGBIO Magnolia biondii HOM05D039687 ORTHO05D003325 5.2e-13 79.3 292 30.1
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 5.2e-13 79.3 144 41.7
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 5.2e-13 79.3 202 43.6
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 8.8e-13 78.6 258 29.8
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.2e-12 78.2 162 37.0
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 2.6e-12 77.0 227 36.6
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 3.4e-12 76.6 203 35.0
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 4.4e-12 76.3 278 29.5
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 5.7e-12 75.9 218 36.2
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 9.7e-12 75.1 113 46.0
CsaV3_3G035080 Cucumis sativus L. HOM05D004206 ORTHO05D003325 3.7e-11 73.2 255 36.9
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 4.8e-11 72.8 156 35.3
CDE02G3836 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 6.3e-11 72.4 170 30.0
SGA_v2.0_scaffold75G24932 Striga asiatica HOM05D004206 ORTHO05D003325 6.3e-11 72.4 180 32.2
Os05g0113500 Oryza sativa ssp. japonica HOM05D004206 ORTHO05D003325 1.1e-10 71.6 234 34.6
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 1.8e-10 70.9 272 29.4
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 2.4e-10 70.5 289 33.2
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 2.4e-10 70.5 262 28.6
Hma1.2p1_1535F.1_g289470 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 3.1e-10 70.1 144 37.5
CDE09G0187 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 4.1e-10 69.7 171 31.6
PGR004G2702 Punica granatum HOM05D004206 ORTHO05D003325 7.0e-10 68.9 297 30.3
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 9.1e-10 68.6 44 72.7
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 1.2e-09 68.2 156 35.9
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 2.7e-09 67.0 150 38.0
MBI14_g24307_MAGBIO Magnolia biondii HOM05D039687 ORTHO05D003325 3.5e-09 66.6 279 26.2
HanXRQChr14g0459281 Helianthus annuus HOM05D004206 ORTHO05D003325 7.7e-09 65.5 51 60.8
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 1.0e-08 65.1 159 42.8
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 1.3e-08 64.7 154 34.4
Actinidia33402 Actinidia chinensis HOM05D004206 ORTHO05D003325 3.8e-08 63.2 68 58.8
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 3.8e-08 63.2 154 33.8
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 3.8e-08 63.2 152 36.8
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 3.8e-08 63.2 160 30.0
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 8.5e-08 62.0 152 34.9
Lsat_1_v5_gn_1_55700 Lactuca sativa HOM05D004206 ORTHO05D003325 1.1e-07 61.6 92 43.5
TAR636G2227 Trochodendron aralioides HOM05D039687 ORTHO05D003325 1.1e-07 61.6 134 37.3
Lsat_1_v5_gn_2_110560 Lactuca sativa HOM05D000437 ORTHO05D003325 2.5e-07 60.5 50 60.0
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 3.2e-07 60.1 114 37.7
SEGI_05191 Sequoiadendron giganteum HOM05D004206 ORTHO05D003325 4.2e-07 59.7 118 33.9
HanXRQChr11g0349321 Helianthus annuus HOM05D004206 ORTHO05D003325 7.2e-07 58.9 56 53.6
Lsat_1_v5_gn_6_32400 Lactuca sativa HOM05D004206 ORTHO05D003325 7.2e-07 58.9 69 49.3
Rhsim13G0085900 Rhododendron simsii HOM05D004206 ORTHO05D003325 2.7e-06 57.0 112 39.3
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 4.7e-06 56.2 142 31.7
Zm00001eb266560 Zea mays HOM05D019293 ORTHO05D003325 6.1e-06 55.8 147 40.1


User provided reference genes

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