Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.6e-89 332.0 170 100.0
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 3.4e-60 235.3 194 70.1
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 4.5e-57 224.9 194 66.0
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 1.0e-53 213.8 194 62.9
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 1.8e-53 213.0 190 65.3
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.2e-52 210.3 190 63.7
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 1.2e-52 210.3 190 63.7
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 4.4e-52 208.4 190 63.2
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 5.7e-52 208.0 190 63.2
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 5.7e-52 208.0 197 61.9
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 7.5e-52 207.6 190 62.6
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 9.8e-52 207.2 197 61.9
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 1.3e-51 206.8 194 61.3
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 2.9e-51 205.7 194 61.3
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 2.9e-51 205.7 190 62.1
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 3.7e-51 205.3 193 63.2
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 3.7e-51 205.3 190 63.7
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 6.4e-51 204.5 190 62.6
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 8.3e-51 204.1 193 62.7
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.4e-50 203.4 190 63.2
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 1.4e-50 203.4 189 61.9
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 1.4e-50 203.4 189 61.9
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 1.8e-50 203.0 190 62.6
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 2.4e-50 202.6 189 61.4
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 3.2e-50 202.2 190 62.6
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 4.1e-50 201.8 189 61.4
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 5.4e-50 201.4 190 63.2
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 1.2e-49 200.3 184 64.7
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.2e-49 200.3 190 61.6
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 1.2e-49 200.3 189 61.4
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 1.6e-49 199.9 189 63.5
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 2.0e-49 199.5 190 61.6
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 3.5e-49 198.7 190 61.6
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 3.5e-49 198.7 184 63.6
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 4.6e-49 198.4 190 61.1
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 7.8e-49 197.6 191 61.3
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 7.8e-49 197.6 190 61.6
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 1.0e-48 197.2 190 61.1
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 1.3e-48 196.8 190 61.1
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.3e-48 196.8 191 61.3
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.3e-48 196.8 191 61.3
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 1.3e-48 196.8 183 62.8
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 1.7e-48 196.4 189 61.4
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 3.0e-48 195.7 191 60.2
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 3.0e-48 195.7 191 60.7
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 5.0e-48 194.9 189 63.0
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 5.0e-48 194.9 194 59.8
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 6.6e-48 194.5 191 61.3
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 8.6e-48 194.1 187 61.5
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 8.6e-48 194.1 197 57.9
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 1.1e-47 193.7 189 61.4
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 1.1e-47 193.7 189 61.4
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 1.1e-47 193.7 136 75.7
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 1.5e-47 193.4 190 61.1
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 1.5e-47 193.4 189 61.4
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 1.5e-47 193.4 189 61.4
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 1.5e-47 193.4 191 59.7
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 1.5e-47 193.4 189 61.4
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 2.5e-47 192.6 189 61.4
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 2.5e-47 192.6 189 61.4
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 2.5e-47 192.6 193 58.5
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 2.5e-47 192.6 193 58.5
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 2.5e-47 192.6 193 58.5
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 3.3e-47 192.2 192 60.4
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 3.3e-47 192.2 189 61.4
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 4.3e-47 191.8 191 61.8
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 4.3e-47 191.8 189 61.4
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 5.6e-47 191.4 189 60.8
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 7.3e-47 191.0 188 59.6
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 9.5e-47 190.7 197 58.4
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 1.2e-46 190.3 192 59.4
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 1.2e-46 190.3 190 59.5
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 1.2e-46 190.3 187 60.4
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 1.6e-46 189.9 189 60.8
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 1.6e-46 189.9 189 60.8
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 2.8e-46 189.1 191 61.3
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 1.4e-45 186.8 173 63.0
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 2.3e-45 186.0 189 57.1
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 3.1e-45 185.7 204 58.3
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 4.0e-45 185.3 191 57.6
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 4.0e-45 185.3 147 69.4
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 6.8e-45 184.5 189 55.6
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 3.4e-44 182.2 189 57.1
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 5.8e-44 181.4 132 75.0
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 7.5e-44 181.0 188 57.4
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 7.5e-44 181.0 189 55.0
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 9.8e-44 180.6 189 55.0
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.3e-43 180.3 189 55.6
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 1.7e-43 179.9 187 57.8
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 2.9e-43 179.1 198 55.1
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 4.9e-43 178.3 186 56.5
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 8.3e-43 177.6 193 57.0
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 1.4e-42 176.8 185 58.4
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 4.1e-42 175.3 188 56.9
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 4.1e-42 175.3 188 56.9
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 7.0e-42 174.5 137 71.5
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 2.0e-41 172.9 187 56.1
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 6.0e-41 171.4 183 57.4
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 3.0e-40 169.1 182 56.6
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 3.9e-40 168.7 180 55.6
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 2.5e-39 166.0 188 56.9
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 7.3e-39 164.5 177 56.5
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 1.2e-38 163.7 185 56.8
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 1.4e-37 160.2 179 54.2
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 3.1e-37 159.1 167 57.5
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 3.1e-37 159.1 196 49.0
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 1.5e-36 156.8 189 50.8
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 5.8e-36 154.8 182 50.0
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 9.8e-36 154.1 194 50.5
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 3.7e-35 152.1 184 50.5
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 4.9e-35 151.8 115 73.0
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 1.4e-34 150.2 191 47.6
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 2.4e-34 149.4 199 47.7
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 1.2e-33 147.1 190 46.3
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 2.1e-33 146.4 134 62.7
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 4.3e-31 138.7 101 69.3
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 2.1e-30 136.3 191 49.7
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 6.2e-30 134.8 120 61.7
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 4.0e-29 132.1 181 42.0
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 2.1e-22 109.8 97 63.9
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 2.9e-19 99.4 90 64.4
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 3.8e-19 99.0 116 52.6
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 2.4e-18 96.3 84 64.3
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.1e-17 93.2 126 51.6
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 4.6e-17 92.0 90 60.0
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 1.1e-15 87.4 75 68.0
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 1.5e-15 87.0 108 42.6
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 2.0e-12 76.6 45 82.2
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 3.8e-11 72.4 68 60.3
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 4.6e-09 65.5 45 73.3
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 1.6e-06 57.0 102 31.4


User provided reference genes

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