Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 1.6e-32 142.1 72 100.0
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 4.8e-24 114.0 82 75.6
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 2.0e-22 108.6 82 74.4
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 7.6e-22 106.7 82 73.2
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 1.3e-18 95.9 82 62.2
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 2.3e-18 95.1 82 59.8
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 8.7e-18 93.2 82 59.8
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 5.3e-15 84.0 82 54.9
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 5.3e-15 84.0 82 57.3
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 1.3e-13 79.3 82 56.1
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 1.3e-13 79.3 82 52.4
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.1e-12 76.3 82 50.0
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 1.1e-12 76.3 76 56.6
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 2.5e-12 75.1 82 54.9
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 7.2e-12 73.6 82 50.0
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 9.4e-12 73.2 82 48.8
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 1.2e-11 72.8 82 50.0
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 1.2e-11 72.8 82 52.4
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 1.2e-11 72.8 73 57.5
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 2.1e-11 72.0 82 46.3
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 2.7e-11 71.6 82 50.0
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 3.6e-11 71.2 82 45.1
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 4.6e-11 70.9 82 48.8
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 6.1e-11 70.5 82 46.3
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 6.1e-11 70.5 82 48.8
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 1.4e-10 69.3 82 48.8
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 1.4e-10 69.3 82 46.3
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 1.4e-10 69.3 82 46.3
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 1.8e-10 68.9 82 47.6
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 2.3e-10 68.6 82 50.0
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 2.3e-10 68.6 82 50.0
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 3.0e-10 68.2 82 46.3
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 3.9e-10 67.8 82 51.2
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 3.9e-10 67.8 82 47.6
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 5.1e-10 67.4 82 48.8
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 6.7e-10 67.0 82 46.3
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 6.7e-10 67.0 82 50.0
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 6.7e-10 67.0 81 44.4
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 8.8e-10 66.6 82 47.6
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 1.1e-09 66.2 77 48.1
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 1.5e-09 65.9 72 47.2
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 2.0e-09 65.5 82 43.9
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 2.5e-09 65.1 82 46.3
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 2.5e-09 65.1 85 43.5
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 3.3e-09 64.7 82 45.1
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 3.3e-09 64.7 82 45.1
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 4.3e-09 64.3 84 45.2
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 7.4e-09 63.5 85 42.4
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 1.7e-08 62.4 82 45.1
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 1.7e-08 62.4 82 42.7
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 1.7e-08 62.4 81 45.7
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 6.3e-08 60.5 75 50.7
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 1.1e-07 59.7 83 42.2
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 4.1e-07 57.8 82 41.5
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 5.3e-07 57.4 82 41.5
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 6.9e-07 57.0 83 41.0
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 6.9e-07 57.0 81 42.0
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 6.9e-07 57.0 81 42.0
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 9.1e-07 56.6 82 40.2
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 1.2e-06 56.2 82 43.9
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 1.5e-06 55.8 81 40.7
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 1.5e-06 55.8 76 44.7
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 2.0e-06 55.5 82 41.5
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 2.0e-06 55.5 79 41.8
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 2.0e-06 55.5 81 40.7
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 2.0e-06 55.5 82 40.2
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 2.0e-06 55.5 82 43.9
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 2.6e-06 55.1 82 42.7
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 2.6e-06 55.1 81 38.3
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 3.4e-06 54.7 82 40.2
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 3.4e-06 54.7 82 37.8
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 4.5e-06 54.3 82 40.2
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 4.5e-06 54.3 82 37.8
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 7.7e-06 53.5 79 40.5


User provided reference genes

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