Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 5.2e-84 314.3 155 100.0
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.3e-54 215.3 153 71.9
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 7.3e-54 214.2 154 72.1
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.7e-50 203.0 153 67.3
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.1e-49 200.3 155 68.4
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 3.9e-47 191.8 151 65.6
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 5.1e-47 191.4 154 64.3
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 5.8e-43 177.9 154 57.8
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.3e-42 176.8 151 61.6
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.2e-42 176.0 151 60.9
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 6.4e-42 174.5 152 61.2
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 6.4e-42 174.5 151 60.3
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.1e-41 173.7 155 60.0
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.1e-41 173.7 153 61.4
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.4e-41 173.3 152 61.2
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 7.1e-41 171.0 151 60.9
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 1.6e-40 169.9 150 58.0
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.1e-40 169.5 222 45.5
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.6e-40 168.3 143 62.2
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 7.8e-40 167.5 145 60.0
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 7.8e-40 167.5 152 58.6
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 7.8e-40 167.5 142 61.3
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.7e-39 166.4 152 58.6
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 3.9e-39 165.2 152 59.2
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 3.9e-39 165.2 152 57.2
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 5.1e-39 164.9 153 56.2
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 5.1e-39 164.9 151 57.0
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 6.6e-39 164.5 157 53.5
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 8.7e-39 164.1 142 59.9
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 8.7e-39 164.1 154 57.1
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.1e-38 163.7 152 57.2
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 1.5e-38 163.3 157 53.5
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.9e-38 162.9 146 58.2
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 3.3e-38 162.2 153 56.9
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 5.6e-38 161.4 148 56.8
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 7.3e-38 161.0 153 54.9
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 9.6e-38 160.6 157 52.2
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.1e-37 159.5 150 54.7
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 2.8e-37 159.1 155 54.2
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 3.6e-37 158.7 150 55.3
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 3.6e-37 158.7 157 55.4
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 6.2e-37 157.9 153 54.9
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 8.1e-37 157.5 150 55.3
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 1.8e-36 156.4 152 52.6
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 3.1e-36 155.6 146 54.1
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 4.0e-36 155.2 151 54.3
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 5.3e-36 154.8 157 53.5
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 6.9e-36 154.5 154 53.2
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 6.9e-36 154.5 151 56.3
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 6.9e-36 154.5 151 56.3
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 6.9e-36 154.5 180 51.1
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 6.9e-36 154.5 149 54.4
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 6.9e-36 154.5 152 55.9
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 9.0e-36 154.1 145 55.9
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 9.0e-36 154.1 174 48.9
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 9.0e-36 154.1 168 48.8
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.5e-35 153.3 162 52.5
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.5e-35 153.3 162 52.5
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.5e-35 153.3 162 52.5
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 2.6e-35 152.5 148 53.4
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.4e-35 152.1 163 52.8
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.5e-35 151.8 163 52.1
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 4.5e-35 151.8 153 55.6
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 7.6e-35 151.0 157 51.0
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 9.9e-35 150.6 150 54.7
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.3e-34 150.2 153 54.9
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 1.7e-34 149.8 157 52.9
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.7e-34 149.8 163 51.5
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 2.2e-34 149.4 155 51.0
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 2.9e-34 149.1 155 49.7
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 2.9e-34 149.1 147 53.1
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 3.8e-34 148.7 153 51.0
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 4.9e-34 148.3 157 48.4
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.1e-33 147.1 152 50.7
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.1e-33 147.1 155 50.3
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 1.1e-33 147.1 150 56.0
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 1.4e-33 146.7 151 55.6
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.2e-33 145.2 152 50.7
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 5.4e-33 144.8 172 51.2
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 7.1e-33 144.4 155 53.5
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 7.1e-33 144.4 162 52.5
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 9.3e-33 144.1 152 51.3
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 9.3e-33 144.1 152 51.3
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.2e-32 143.7 152 53.3
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 2.1e-32 142.9 146 53.4
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 3.5e-32 142.1 148 52.7
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 4.6e-32 141.7 148 51.4
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 4.6e-32 141.7 146 52.1
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 7.9e-32 141.0 154 51.9
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.8e-31 139.8 152 50.7
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 2.3e-31 139.4 145 49.7
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 3.9e-31 138.7 152 50.0
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 3.9e-31 138.7 215 40.5
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 5.1e-31 138.3 146 51.4
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 5.1e-31 138.3 150 52.7
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 2.5e-30 136.0 145 51.0
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.3e-30 135.6 152 47.4
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 4.3e-30 135.2 184 45.7
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 7.4e-30 134.4 100 67.0
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.6e-29 133.3 146 50.7
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 1.6e-29 133.3 152 50.7
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 4.0e-28 128.6 153 44.4
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 4.0e-28 128.6 147 46.3
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 6.9e-28 127.9 147 46.3
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 9.0e-28 127.5 135 51.9
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 2.6e-27 125.9 158 44.9
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 2.6e-27 125.9 158 44.9
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 2.6e-27 125.9 158 44.9
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.0e-26 124.0 145 47.6
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 1.3e-26 123.6 147 44.2
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 2.2e-26 122.9 155 44.5
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 2.2e-26 122.9 145 46.2
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 3.8e-26 122.1 69 82.6
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 6.5e-26 121.3 151 46.4
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 8.4e-26 120.9 144 47.2
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.1e-25 120.6 125 52.8
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 2.5e-25 119.4 145 45.5
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 3.2e-25 119.0 142 45.1
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 5.5e-25 118.2 151 47.0
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 9.3e-25 117.5 151 43.7
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 2.7e-24 115.9 145 45.5
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 4.6e-24 115.2 150 44.0
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 7.9e-24 114.4 156 43.6
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.3e-23 113.6 156 42.3
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 1.9e-22 109.8 125 48.0
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 2.5e-22 109.4 154 41.6
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.5e-22 109.4 137 43.1
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 2.5e-22 109.4 136 46.3
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 5.7e-22 108.2 132 47.0
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 9.6e-22 107.5 68 75.0
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.4e-20 103.6 67 73.1
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.4e-17 93.6 152 42.1
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.7e-16 89.4 147 39.5
Actinidia18194 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.0e-15 85.9 72 61.1
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 6.3e-13 78.2 79 45.6
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 3.1e-12 75.9 147 36.7
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.1e-09 67.4 185 29.2
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 3.2e-09 65.9 137 32.1
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 9.4e-09 64.3 58 55.2
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 3.0e-07 59.3 98 35.7
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 6.7e-07 58.2 71 43.7


User provided reference genes

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