Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.2e-34 147.9 76 100.0
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.1e-18 94.4 80 70.0
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.6e-17 92.4 80 70.0
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 6.0e-17 90.5 78 69.2
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 6.6e-16 87.0 63 77.8
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 6.6e-16 87.0 61 82.0
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 2.5e-15 85.1 58 82.8
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 3.3e-15 84.7 58 79.3
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 4.3e-15 84.3 63 73.0
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 5.6e-15 84.0 63 73.0
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 5.6e-15 84.0 58 77.6
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 5.6e-15 84.0 61 75.4
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 7.3e-15 83.6 60 78.3
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 9.5e-15 83.2 62 75.8
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 9.5e-15 83.2 60 76.7
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 9.5e-15 83.2 61 77.0
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.2e-14 82.8 61 73.8
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 2.1e-14 82.0 56 78.6
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 2.1e-14 82.0 59 74.6
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 2.1e-14 82.0 60 75.0
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 3.6e-14 81.3 63 71.4
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 4.7e-14 80.9 63 71.4
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 4.7e-14 80.9 59 78.0
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 4.7e-14 80.9 59 78.0
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 4.7e-14 80.9 80 63.8
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 4.7e-14 80.9 80 63.8
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 4.7e-14 80.9 80 63.8
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 6.2e-14 80.5 58 77.6
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.2e-14 80.5 63 71.4
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.2e-14 80.5 63 71.4
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 6.2e-14 80.5 57 77.2
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 8.1e-14 80.1 61 68.9
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.1e-13 79.7 59 72.9
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 1.1e-13 79.7 80 63.8
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 1.1e-13 79.7 63 73.0
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.1e-13 79.7 59 74.6
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.1e-13 79.7 63 68.3
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.4e-13 79.3 57 73.7
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.4e-13 79.3 58 77.6
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.4e-13 79.3 58 77.6
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 1.4e-13 79.3 61 68.9
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 1.8e-13 79.0 60 70.0
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.8e-13 79.0 61 72.1
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.8e-13 79.0 57 71.9
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 2.4e-13 78.6 61 68.9
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 2.4e-13 78.6 60 71.7
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 2.4e-13 78.6 59 69.5
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 3.1e-13 78.2 60 73.3
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 3.1e-13 78.2 59 74.6
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 3.1e-13 78.2 61 68.9
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 3.1e-13 78.2 60 71.7
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 3.1e-13 78.2 57 75.4
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.1e-13 78.2 57 71.9
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 4.0e-13 77.8 61 67.2
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 4.0e-13 77.8 61 67.2
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 4.0e-13 77.8 61 67.2
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 4.0e-13 77.8 61 67.2
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 4.0e-13 77.8 61 67.2
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 4.0e-13 77.8 61 67.2
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.0e-13 77.8 60 73.3
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 4.0e-13 77.8 57 71.9
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 4.0e-13 77.8 59 76.3
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 4.0e-13 77.8 60 70.0
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 4.0e-13 77.8 58 75.9
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 4.0e-13 77.8 58 72.4
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 5.2e-13 77.4 59 71.2
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 5.2e-13 77.4 61 67.2
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 6.8e-13 77.0 61 67.2
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 6.8e-13 77.0 61 67.2
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 6.8e-13 77.0 57 71.9
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 6.8e-13 77.0 57 71.9
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 6.8e-13 77.0 61 67.2
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 6.8e-13 77.0 55 76.4
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 6.8e-13 77.0 61 67.2
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 6.8e-13 77.0 61 67.2
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 8.9e-13 76.6 57 71.9
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 8.9e-13 76.6 55 74.5
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.2e-12 76.3 59 71.2
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 1.2e-12 76.3 58 74.1
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 1.2e-12 76.3 59 69.5
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.5e-12 75.9 61 65.6
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.5e-12 75.9 59 69.5
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.5e-12 75.9 59 69.5
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 1.5e-12 75.9 59 69.5
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.5e-12 75.9 59 69.5
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.5e-12 75.9 59 69.5
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 1.5e-12 75.9 61 70.5
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.5e-12 75.9 63 66.7
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.5e-12 75.9 63 65.1
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 2.0e-12 75.5 57 71.9
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 2.0e-12 75.5 61 65.6
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 2.6e-12 75.1 59 67.8
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 2.6e-12 75.1 59 71.2
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 2.6e-12 75.1 55 76.4
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 2.6e-12 75.1 59 71.2
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 3.4e-12 74.7 61 70.5
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.4e-12 74.7 61 70.5
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 5.8e-12 73.9 63 68.3
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 5.8e-12 73.9 63 68.3
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 5.8e-12 73.9 57 73.7
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 9.9e-12 73.2 59 67.8
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.3e-11 72.8 63 66.7
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 1.3e-11 72.8 59 62.7
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 1.7e-11 72.4 54 72.2
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.7e-11 72.4 54 72.2
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.7e-11 72.4 59 71.2
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 2.2e-11 72.0 58 67.2
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.8e-11 71.2 57 68.4
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.9e-11 70.9 57 64.9
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 2.4e-10 68.6 80 55.0
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.1e-10 67.8 55 67.3
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 1.2e-09 66.2 59 61.0
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.2e-09 66.2 53 69.8
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 2.1e-09 65.5 53 69.8
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 4.6e-09 64.3 37 81.1
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 2.3e-08 62.0 37 83.8
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 7.3e-07 57.0 59 49.2
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.6e-06 55.8 56 51.8


User provided reference genes

Program Settings