Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.1e-206 721.1 347 100.0
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.3e-162 576.6 348 84.8
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.5e-150 534.6 309 87.4
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.2e-149 533.5 309 86.7
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.5e-144 515.0 348 75.3
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 7.9e-141 504.2 335 74.6
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.3e-138 494.6 335 73.4
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 3.4e-136 488.8 336 71.1
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 2.2e-135 486.1 336 70.2
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 1.9e-134 483.0 339 70.2
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 7.2e-134 481.1 336 70.2
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 9.4e-134 480.7 338 69.8
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 9.4e-134 480.7 338 70.4
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 2.1e-133 479.6 346 68.8
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 6.1e-133 478.0 336 69.9
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 7.9e-133 477.6 338 68.9
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 3.9e-132 475.3 348 67.8
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 5.1e-132 474.9 339 69.0
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 1.1e-131 473.8 335 67.8
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 2.0e-131 473.0 333 70.6
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.3e-131 472.2 336 69.3
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 3.3e-131 472.2 335 69.9
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 4.4e-131 471.9 336 68.8
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 9.7e-131 470.7 338 68.0
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.7e-130 469.9 352 67.9
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 2.8e-130 469.2 364 64.6
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.8e-130 469.2 338 67.8
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.8e-130 468.4 336 68.8
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 4.8e-130 468.4 336 68.8
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.4e-129 466.8 340 67.6
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 2.4e-129 466.1 335 68.4
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 5.3e-129 464.9 334 68.9
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 5.3e-129 464.9 307 76.2
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.2e-128 463.8 335 69.3
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 2.6e-128 462.6 332 69.9
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 4.5e-128 461.8 337 68.5
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 2.2e-127 459.5 336 67.6
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.2e-127 459.5 336 67.6
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 6.5e-127 458.0 335 68.4
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 1.4e-126 456.8 348 67.0
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.4e-126 456.8 335 68.7
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.9e-126 456.4 331 66.8
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.9e-126 456.4 336 67.6
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 4.2e-126 455.3 337 67.4
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 5.5e-126 454.9 330 66.4
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 9.4e-126 454.1 335 66.9
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.2e-125 453.8 335 65.7
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.2e-125 453.8 363 65.0
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 2.7e-125 452.6 335 66.0
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 3.6e-125 452.2 349 67.6
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 4.7e-125 451.8 360 63.9
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.0e-124 450.7 335 65.4
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 2.3e-124 449.5 308 70.5
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 5.2e-124 448.4 310 71.6
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 5.2e-124 448.4 334 66.2
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 7.4e-123 444.5 347 66.6
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.3e-122 443.7 368 62.8
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 2.8e-122 442.6 398 58.8
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 4.8e-122 441.8 347 66.3
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 8.2e-122 441.0 341 66.6
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.1e-121 440.7 337 66.5
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.8e-121 439.9 368 62.2
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.4e-121 439.5 337 66.2
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 4.1e-121 438.7 285 75.4
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.3e-121 438.3 335 65.4
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 2.6e-120 436.0 323 64.4
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 3.5e-120 435.6 335 65.4
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 2.9e-119 432.6 321 68.5
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 3.8e-119 432.2 339 65.5
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.1e-118 430.6 339 65.5
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 1.5e-118 430.3 341 64.2
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 3.2e-118 429.1 319 66.8
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.2e-118 428.7 339 64.9
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 5.5e-118 428.3 341 61.9
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 2.1e-117 426.4 335 64.8
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 8.0e-117 424.5 334 62.3
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.0e-116 424.1 346 62.4
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 2.3e-116 422.9 334 63.2
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 3.0e-116 422.5 340 62.9
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.7e-114 416.8 334 62.0
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 1.7e-114 416.8 339 63.7
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 2.2e-114 416.4 335 61.5
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 6.3e-114 414.8 309 64.7
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 6.3e-114 414.8 346 64.2
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 6.3e-114 414.8 346 60.7
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.8e-113 413.3 336 62.8
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 2.4e-113 412.9 337 61.7
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 2.4e-113 412.9 334 62.0
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 2.4e-113 412.9 336 62.8
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.4e-113 412.9 337 63.2
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 5.3e-113 411.8 336 61.3
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.7e-111 406.8 339 61.1
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 2.9e-111 406.0 336 60.7
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 5.0e-111 405.2 335 59.7
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 8.5e-111 404.4 339 60.8
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 2.5e-110 402.9 334 62.3
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 3.2e-110 402.5 353 58.9
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 5.5e-110 401.7 335 59.7
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 7.2e-110 401.4 335 59.4
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 9.4e-110 401.0 335 59.4
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 9.4e-110 401.0 309 65.0
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.6e-109 400.2 335 59.1
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 1.6e-109 400.2 337 58.8
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 2.7e-109 399.4 335 58.8
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 8.0e-109 397.9 335 58.8
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 1.0e-108 397.5 309 64.4
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 5.2e-108 395.2 335 59.1
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.4e-107 392.1 369 57.2
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 3.1e-105 386.0 267 70.0
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 4.1e-105 385.6 346 58.1
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.5e-104 382.1 370 55.1
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.7e-103 380.2 336 58.9
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 3.8e-103 379.0 314 63.4
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.8e-101 372.9 345 56.8
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 2.0e-96 356.7 335 52.5
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 1.5e-94 350.5 251 70.1
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.2e-91 340.9 321 57.6
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 4.4e-91 339.0 482 41.1
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 6.4e-90 335.1 221 75.6
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 7.0e-89 331.6 336 53.3
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 5.0e-87 325.5 255 62.0
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 3.3e-86 322.8 220 73.2
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.6e-85 320.5 334 51.2
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 2.8e-85 319.7 290 58.3
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.0e-83 313.5 232 67.7
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.5e-78 296.6 291 55.7
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 1.2e-77 294.3 229 67.7
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.6e-77 293.9 186 81.7
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 3.6e-77 292.7 295 52.2
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.7e-77 292.4 392 43.4
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 8.1e-77 291.6 220 64.5
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 1.1e-76 291.2 365 48.8
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.1e-76 289.7 194 78.9
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 4.4e-75 285.8 215 66.0
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 2.9e-74 283.1 233 61.4
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 5.4e-73 278.9 287 51.9
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 7.1e-73 278.5 346 46.5
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 4.6e-72 275.8 312 51.9
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 5.1e-71 272.3 303 46.2
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 8.6e-71 271.6 220 59.5
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.5e-70 270.8 263 55.9
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 1.2e-67 261.2 193 64.2
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.2e-66 256.9 356 42.1
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.0e-63 248.1 235 56.6
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.4e-59 233.0 174 67.8
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 1.6e-56 224.2 283 41.3
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 4.0e-52 209.5 122 82.0
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.2e-49 199.9 329 39.8
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.3e-45 188.0 132 66.7
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.4e-44 184.5 186 57.0
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 7.6e-43 178.7 109 77.1
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 1.7e-42 177.6 158 58.2
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 4.2e-41 172.9 241 46.1
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 2.7e-32 143.7 161 47.8
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 2.5e-30 137.1 232 41.4
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 1.3e-26 124.8 201 35.3
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.3e-26 124.8 307 28.0
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 5.0e-26 122.9 213 35.2
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 1.3e-18 98.2 89 58.4
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 5.5e-17 92.8 216 28.7
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 5.5e-17 92.8 69 58.0
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.2e-16 91.7 69 58.0
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 8.8e-15 85.5 59 62.7
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.1e-12 78.6 72 54.2
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 5.3e-12 76.3 53 66.0
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 5.9e-11 72.8 42 81.0
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 4.2e-09 66.6 53 58.5
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 3.0e-07 60.5 40 62.5
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 4.0e-07 60.1 55 49.1
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.5e-06 58.2 55 47.3
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 7.5e-06 55.8 54 55.6


User provided reference genes

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