Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.1e-47 191.0 97 100.0
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.6e-43 179.1 98 95.9
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.5e-30 134.8 88 83.0
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.5e-30 134.8 88 83.0
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.9e-26 120.6 72 87.5
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 2.0e-25 119.0 88 73.9
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 9.9e-25 116.7 87 70.1
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 4.9e-24 114.4 105 62.9
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 1.4e-23 112.8 85 71.8
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 3.2e-23 111.7 85 70.6
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 5.5e-23 110.9 88 68.2
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 1.2e-22 109.8 88 64.8
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 1.2e-22 109.8 85 69.4
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 1.6e-22 109.4 86 67.4
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 1.6e-22 109.4 88 64.8
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 3.5e-22 108.2 85 68.2
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 3.5e-22 108.2 89 67.4
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 4.6e-22 107.8 85 68.2
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 4.6e-22 107.8 85 68.2
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 4.6e-22 107.8 85 68.2
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 7.9e-22 107.1 86 68.6
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 1.0e-21 106.7 84 70.2
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.0e-21 106.7 84 69.0
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 1.0e-21 106.7 86 65.1
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 1.3e-21 106.3 85 67.1
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 1.3e-21 106.3 85 67.1
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 1.3e-21 106.3 87 63.2
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 1.3e-21 106.3 105 56.2
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 1.3e-21 106.3 91 61.5
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 1.8e-21 105.9 88 62.5
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 2.3e-21 105.5 83 68.7
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 2.3e-21 105.5 88 62.5
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 2.3e-21 105.5 87 64.4
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 3.0e-21 105.1 88 62.5
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 3.9e-21 104.8 88 62.5
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 5.1e-21 104.4 88 63.6
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 5.1e-21 104.4 88 60.2
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 6.7e-21 104.0 85 64.7
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 6.7e-21 104.0 87 63.2
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 6.7e-21 104.0 88 62.5
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 8.7e-21 103.6 83 67.5
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 8.7e-21 103.6 86 64.0
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.1e-20 103.2 85 63.5
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 1.5e-20 102.8 88 64.8
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 1.5e-20 102.8 86 61.6
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 1.5e-20 102.8 88 63.6
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 1.5e-20 102.8 84 66.7
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 1.9e-20 102.4 84 65.5
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 1.9e-20 102.4 83 65.1
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 1.9e-20 102.4 88 62.5
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 2.5e-20 102.1 83 67.5
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.5e-20 102.1 83 65.1
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 3.3e-20 101.7 83 67.5
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 3.3e-20 101.7 87 62.1
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 4.3e-20 101.3 83 65.1
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 4.3e-20 101.3 86 62.8
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 5.6e-20 100.9 83 66.3
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 5.6e-20 100.9 84 64.3
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 5.6e-20 100.9 83 66.3
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 5.6e-20 100.9 88 62.5
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 5.6e-20 100.9 88 62.5
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 5.6e-20 100.9 88 62.5
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 7.4e-20 100.5 82 65.9
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 7.4e-20 100.5 82 65.9
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 7.4e-20 100.5 88 62.5
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 9.6e-20 100.1 85 61.2
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 9.6e-20 100.1 84 64.3
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 9.6e-20 100.1 84 64.3
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.6e-19 99.4 83 63.9
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.6e-19 99.4 87 63.2
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 2.1e-19 99.0 88 56.8
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 2.8e-19 98.6 87 60.9
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 3.7e-19 98.2 88 59.1
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 6.2e-19 97.4 84 61.9
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 6.2e-19 97.4 88 61.4
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 8.2e-19 97.1 84 59.5
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 8.2e-19 97.1 93 59.1
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 1.1e-18 96.7 88 56.8
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.4e-18 96.3 88 58.0
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 1.4e-18 96.3 84 61.9
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.4e-18 96.3 84 57.1
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 1.8e-18 95.9 88 59.1
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 2.4e-18 95.5 88 56.8
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 2.4e-18 95.5 88 56.8
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 2.4e-18 95.5 84 65.5
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 3.1e-18 95.1 85 60.0
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 3.1e-18 95.1 87 62.1
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 4.0e-18 94.7 87 59.8
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 5.3e-18 94.4 84 60.7
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 5.3e-18 94.4 86 59.3
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 5.3e-18 94.4 88 55.7
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 1.2e-17 93.2 88 55.7
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.0e-17 92.4 84 60.7
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 2.0e-17 92.4 87 60.9
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.0e-16 90.1 88 54.5
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 2.9e-16 88.6 84 58.3
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 4.9e-16 87.8 84 56.0
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 6.5e-16 87.4 84 56.0
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.9e-15 85.9 85 54.1
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 3.2e-15 85.1 84 54.8
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 1.6e-14 82.8 86 55.8
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 3.0e-13 78.6 78 56.4
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 6.3e-11 70.9 93 40.9
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 9.0e-10 67.0 93 40.9
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 2.6e-09 65.5 92 39.1
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 3.4e-09 65.1 94 38.3
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.7e-08 62.8 89 41.6
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 5.0e-08 61.2 86 39.5
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 3.2e-07 58.5 93 35.5
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 6.1e-06 54.3 93 34.4


User provided reference genes

Program Settings