Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 2.0e-65 252.3 129 100.0
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.3e-59 233.0 117 100.0
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.4e-55 219.5 127 85.8
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.3e-51 206.5 117 86.3
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 3.7e-51 204.9 117 85.5
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 6.3e-51 204.1 119 83.2
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.4e-50 203.0 118 84.7
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 2.4e-50 202.2 117 84.6
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 7.0e-50 200.7 120 82.5
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 9.1e-50 200.3 117 82.9
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 2.0e-49 199.1 118 81.4
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 5.9e-49 197.6 116 83.6
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 5.9e-49 197.6 116 83.6
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 1.0e-48 196.8 117 82.1
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.3e-48 196.4 116 81.0
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 1.3e-48 196.4 116 81.0
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.3e-48 196.4 116 81.9
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.7e-48 196.1 116 81.9
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 2.2e-48 195.7 116 81.9
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 3.8e-48 194.9 117 82.1
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 8.5e-48 193.7 116 80.2
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 8.5e-48 193.7 116 81.9
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 8.5e-48 193.7 113 85.8
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.1e-47 193.4 116 80.2
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.5e-47 193.0 116 79.3
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 1.5e-47 193.0 117 82.1
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.5e-47 193.0 117 82.1
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.5e-47 193.0 117 82.1
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.5e-47 193.0 116 79.3
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 1.5e-47 193.0 117 82.1
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.9e-47 192.6 116 81.9
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.9e-47 192.6 124 75.8
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 1.9e-47 192.6 116 79.3
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.9e-47 192.6 124 76.6
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 3.2e-47 191.8 116 81.0
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 3.2e-47 191.8 124 76.6
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 3.2e-47 191.8 117 81.2
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 4.2e-47 191.4 116 79.3
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 5.5e-47 191.0 122 77.0
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.5e-47 191.0 117 81.2
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 7.2e-47 190.7 116 78.4
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 7.2e-47 190.7 116 78.4
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 7.2e-47 190.7 117 79.5
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 9.4e-47 190.3 116 81.0
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.2e-46 189.9 116 80.2
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 1.2e-46 189.9 116 77.6
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 1.6e-46 189.5 116 81.0
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 1.6e-46 189.5 117 80.3
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 2.1e-46 189.1 124 74.2
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 2.7e-46 188.7 107 86.9
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 4.7e-46 188.0 117 78.6
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 6.1e-46 187.6 124 73.4
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 8.0e-46 187.2 116 76.7
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 8.0e-46 187.2 116 76.7
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 8.0e-46 187.2 116 76.7
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 8.0e-46 187.2 116 77.6
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 1.0e-45 186.8 116 76.7
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 1.0e-45 186.8 117 76.1
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 1.0e-45 186.8 124 73.4
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 1.4e-45 186.4 117 76.9
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 1.4e-45 186.4 124 76.6
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 5.2e-45 184.5 117 75.2
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 6.7e-45 184.1 124 73.4
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 8.8e-45 183.7 123 73.2
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 2.6e-44 182.2 116 75.9
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 2.6e-44 182.2 119 77.3
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 3.3e-44 181.8 116 75.0
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 3.3e-44 181.8 116 75.0
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 4.4e-44 181.4 116 76.7
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 4.4e-44 181.4 117 74.4
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 5.7e-44 181.0 113 77.9
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 7.5e-44 180.6 116 75.0
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 7.5e-44 180.6 117 76.1
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 9.7e-44 180.3 117 76.9
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 9.7e-44 180.3 117 75.2
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 3.7e-43 178.3 117 73.5
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.8e-43 177.9 148 64.9
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 4.8e-43 177.9 117 76.1
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.4e-42 175.6 119 73.1
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 2.4e-42 175.6 119 72.3
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.1e-42 174.9 119 72.3
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 5.3e-42 174.5 117 66.7
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 7.0e-42 174.1 116 74.1
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 1.2e-41 173.3 117 74.4
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.3e-40 169.9 116 70.7
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 1.7e-40 169.5 110 73.6
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.9e-40 168.7 117 65.0
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 5.2e-37 157.9 94 80.9
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.5e-36 156.4 117 65.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 2.0e-36 156.0 117 65.0
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 2.0e-36 156.0 90 82.2
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 3.4e-36 155.2 117 64.1
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 9.8e-36 153.7 116 66.4
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.3e-35 153.3 117 63.2
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.3e-35 153.3 117 63.2
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.7e-35 152.9 142 57.7
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.7e-35 152.9 91 82.4
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 4.8e-35 151.4 117 64.1
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 4.8e-35 151.4 117 64.1
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 6.3e-35 151.0 118 61.0
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 1.1e-34 150.2 89 79.8
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 4.1e-34 148.3 114 67.5
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 7.0e-34 147.5 90 76.7
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.1e-34 147.1 118 60.2
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.2e-33 146.7 89 77.5
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 4.5e-33 144.8 89 75.3
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 4.5e-33 144.8 111 65.8
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.7e-33 144.1 118 60.2
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.0e-32 143.7 117 60.7
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.7e-32 142.9 118 58.5
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 3.8e-32 141.7 117 58.1
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 3.8e-32 141.7 117 58.1
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 5.0e-32 141.4 117 57.3
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 5.0e-32 141.4 117 57.3
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 1.5e-31 139.8 117 58.1
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 2.5e-31 139.0 89 71.9
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.2e-31 138.7 117 56.4
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 4.2e-31 138.3 102 60.8
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 5.5e-31 137.9 117 57.3
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 3.6e-30 135.2 89 68.5
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 4.7e-30 134.8 115 62.6
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.4e-29 133.3 117 54.7
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 8.8e-29 130.6 89 64.0
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 9.2e-26 120.6 77 67.5
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 1.6e-25 119.8 84 72.6
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.0e-22 107.5 113 51.3
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 8.9e-21 104.0 71 67.6
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 8.9e-21 104.0 117 47.0
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 3.4e-20 102.1 117 47.0
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.3e-19 100.1 117 43.6
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.7e-19 99.8 99 54.5
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.4e-18 96.7 55 74.5
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 7.0e-18 94.4 73 56.2
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 2.3e-16 89.4 99 47.5
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 5.0e-16 88.2 75 64.0
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.1e-15 87.0 89 58.4
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 3.3e-15 85.5 75 62.7
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 9.5e-15 84.0 59 67.8
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.2e-12 77.0 58 63.8
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 1.5e-12 76.6 54 70.4
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.0e-12 76.3 91 49.5
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.0e-12 76.3 48 83.3
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 3.4e-12 75.5 83 45.8
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.6e-09 66.6 53 50.9
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 6.0e-09 64.7 66 56.1
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.9e-07 59.7 43 76.7
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 3.6e-06 55.5 25 88.0


User provided reference genes

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