Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 3.5e-100 368.2 180 100.0
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 3.5e-100 368.2 180 100.0
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.6e-89 332.8 180 87.8
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 2.8e-89 332.0 180 87.2
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 86.1
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 87.2
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 86.1
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 86.1
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 86.1
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 4.0e-88 328.2 180 85.0
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 4.0e-88 328.2 180 86.1
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 5.3e-88 327.8 179 85.5
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 85.6
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 88.3
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 86.1
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.5e-87 326.2 180 85.6
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 86.1
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 7.6e-87 323.9 180 83.3
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 7.6e-87 323.9 180 84.4
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 1.3e-86 323.2 180 83.9
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.3e-86 323.2 180 84.4
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 83.9
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 82.8
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 84.4
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.3
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 85.0
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 83.9
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 83.3
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 83.3
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 83.9
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 86.1
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 83.9
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 83.9
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 83.9
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 82.8
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 83.3
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 4.9e-86 321.2 165 92.1
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 4.9e-86 321.2 180 82.8
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 4.9e-86 321.2 180 82.8
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 84.4
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 82.8
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 83.9
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 82.8
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 8.4e-86 320.5 180 82.8
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 83.9
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 1.4e-85 319.7 180 83.3
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 1.4e-85 319.7 206 77.7
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 83.3
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 3.2e-85 318.5 180 83.3
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 82.2
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 83.3
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 5.5e-85 317.8 180 82.2
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 9.3e-85 317.0 181 82.9
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 82.8
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 82.8
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 83.3
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 81.1
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 2.1e-84 315.8 181 81.8
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 81.7
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 2.7e-84 315.5 180 81.7
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 2.7e-84 315.5 180 81.7
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 3.0e-83 312.0 180 82.2
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 3.9e-83 311.6 181 81.2
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 1.5e-82 309.7 199 75.9
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 1.9e-82 309.3 180 81.1
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.9e-82 309.3 180 79.4
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 4.3e-82 308.1 180 78.3
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 9.6e-82 307.0 180 81.7
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 9.6e-82 307.0 180 81.1
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 3.7e-81 305.1 180 81.7
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 2.4e-80 302.4 180 77.8
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 2.4e-80 302.4 180 78.9
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 7.6e-79 297.4 203 70.4
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 1.7e-78 296.2 187 75.9
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 4.2e-77 291.6 159 86.8
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 9.3e-77 290.4 160 86.2
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 9.3e-77 290.4 180 78.9
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 2.7e-76 288.9 159 86.8
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.5e-74 283.1 174 77.0
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 3.3e-74 282.0 175 76.6
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 5.7e-74 281.2 161 80.7
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 7.4e-74 280.8 180 76.1
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 4.8e-73 278.1 177 73.4
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 1.1e-72 276.9 160 80.6
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.0e-71 272.7 180 73.9
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 4.5e-71 271.6 160 78.8
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 4.5e-71 271.6 177 70.1
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 7.6e-71 270.8 156 82.1
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.9e-70 268.9 167 76.0
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 1.1e-69 266.9 162 76.5
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 1.6e-68 263.1 172 75.6
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 2.1e-68 262.7 164 75.6
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 7.9e-68 260.8 218 63.3
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 1.0e-67 260.4 175 68.0
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 1.6e-65 253.1 139 84.2
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 3.7e-65 251.9 139 83.5
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 9.1e-64 247.3 143 79.7
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 2.0e-63 246.1 175 64.0
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 5.5e-61 238.0 181 69.1
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 4.4e-58 228.4 171 60.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 9.4e-53 210.7 114 83.3
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 2.6e-50 202.6 121 76.9
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 4.8e-49 198.4 174 51.1
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 2.4e-48 196.1 117 73.5
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 3.8e-46 188.7 116 73.3
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 3.3e-42 175.6 96 87.5
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 4.4e-42 175.3 188 52.1
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 4.4e-42 175.3 188 52.1
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 1.6e-39 166.8 93 80.6
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 3.8e-38 162.2 115 72.2
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 4.7e-36 155.2 91 79.1
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 6.1e-36 154.8 176 44.3
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 2.0e-34 149.8 174 39.7
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 6.3e-33 144.8 116 58.6
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 2.9e-30 136.0 177 44.6
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.2e-28 130.6 79 75.9
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 4.9e-25 118.6 65 87.7
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 5.9e-23 111.7 99 59.6
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.1e-21 107.5 71 64.8
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 8.0e-20 101.3 100 57.0
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 4.4e-18 95.5 56 83.9
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 8.3e-17 91.3 56 76.8
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 1.7e-14 83.6 50 78.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 3.0e-14 82.8 46 80.4
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.7e-07 59.7 57 54.4
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 8.6e-06 54.7 38 65.8


User provided reference genes

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