Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.3e-110 403.3 234 100.0
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.3e-78 297.0 268 71.3
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 1.3e-38 164.1 262 48.5
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.1e-37 161.0 260 49.6
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 5.7e-34 148.7 234 50.0
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 5.3e-32 142.1 245 44.5
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 5.3e-32 142.1 237 40.5
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 1.6e-31 140.6 246 39.0
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.0e-31 140.2 253 41.1
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 2.6e-31 139.8 249 40.2
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 2.6e-31 139.8 249 40.2
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 7.7e-31 138.3 251 37.8
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 1.7e-30 137.1 259 38.6
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 2.9e-30 136.3 243 42.8
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 3.8e-30 136.0 255 38.0
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 5.0e-30 135.6 237 38.0
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 6.5e-30 135.2 256 44.1
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 8.5e-30 134.8 241 41.5
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 8.5e-30 134.8 250 44.0
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 8.5e-30 134.8 271 37.3
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 2.5e-29 133.3 266 36.5
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 3.2e-29 132.9 234 39.7
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.2e-29 132.9 250 40.8
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 3.2e-29 132.9 238 41.6
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 4.2e-29 132.5 245 40.0
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 4.2e-29 132.5 235 41.3
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 7.2e-29 131.7 255 36.9
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 9.4e-29 131.3 235 39.1
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 2.1e-28 130.2 241 37.3
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 2.7e-28 129.8 242 40.1
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 2.7e-28 129.8 240 38.8
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 3.6e-28 129.4 255 38.8
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 3.6e-28 129.4 238 43.3
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 6.1e-28 128.6 255 37.6
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 6.1e-28 128.6 263 37.6
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 6.1e-28 128.6 239 42.7
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 3.0e-27 126.3 256 37.1
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 6.7e-27 125.2 154 50.0
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 8.8e-27 124.8 251 44.6
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 1.5e-26 124.0 240 38.3
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 1.5e-26 124.0 240 37.9
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.5e-26 124.0 240 39.6
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 2.0e-26 123.6 249 40.2
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 2.6e-26 123.2 250 45.2
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 3.3e-26 122.9 242 40.9
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 9.7e-26 121.3 192 42.2
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 9.7e-26 121.3 74 75.7
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.3e-25 120.9 248 45.2
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 1.7e-25 120.6 233 36.9
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 2.2e-25 120.2 246 41.5
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 2.2e-25 120.2 244 36.5
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 3.7e-25 119.4 242 42.1
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 3.7e-25 119.4 235 39.1
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 4.8e-25 119.0 238 37.4
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 6.3e-25 118.6 77 71.4
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 6.3e-25 118.6 77 71.4
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 8.2e-25 118.2 248 37.5
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.4e-24 117.5 169 43.2
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.8e-24 117.1 77 70.1
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 2.4e-24 116.7 244 38.9
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.4e-24 116.7 248 43.1
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 3.1e-24 116.3 179 39.7
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 4.1e-24 115.9 180 37.8
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 4.1e-24 115.9 245 41.6
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 5.3e-24 115.5 240 37.5
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 7.0e-24 115.2 238 35.7
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 1.6e-23 114.0 243 39.5
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 1.6e-23 114.0 236 37.3
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 1.6e-23 114.0 250 40.0
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 2.0e-23 113.6 220 39.1
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 2.0e-23 113.6 260 41.9
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 2.7e-23 113.2 218 38.5
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 2.7e-23 113.2 78 64.1
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 7.7e-23 111.7 231 41.1
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 7.7e-23 111.7 80 61.2
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.0e-22 111.3 174 41.4
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.2e-22 110.2 238 39.5
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.2e-22 110.2 233 38.6
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 3.8e-22 109.4 76 65.8
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 3.8e-22 109.4 85 62.4
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 6.5e-22 108.6 80 57.5
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 1.5e-21 107.5 80 61.2
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 1.9e-21 107.1 78 65.4
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.2e-21 106.3 231 35.5
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 4.2e-21 105.9 193 36.8
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 5.5e-21 105.5 234 36.8
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 5.5e-21 105.5 253 34.0
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 7.2e-21 105.1 231 42.4
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 9.4e-21 104.8 255 42.0
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 9.4e-21 104.8 230 39.1
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 2.1e-20 103.6 241 39.8
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 2.7e-20 103.2 184 38.6
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 4.7e-20 102.4 231 38.1
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 6.1e-20 102.1 237 35.4
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 8.0e-20 101.7 183 45.4
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 8.0e-20 101.7 183 45.4
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.0e-19 101.3 234 35.5
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 1.4e-19 100.9 232 39.2
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 1.8e-19 100.5 186 37.6
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 5.2e-19 99.0 74 64.9
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 5.2e-19 99.0 200 44.0
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 5.2e-19 99.0 80 63.8
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 5.2e-19 99.0 80 60.0
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 6.8e-19 98.6 74 59.5
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 8.8e-19 98.2 229 34.5
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 8.8e-19 98.2 150 51.3
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 8.8e-19 98.2 251 35.1
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 1.5e-18 97.4 233 37.3
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 2.0e-18 97.1 206 39.8
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 2.0e-18 97.1 78 56.4
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 2.6e-18 96.7 77 54.5
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 3.4e-18 96.3 165 39.4
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 4.4e-18 95.9 68 63.2
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 4.4e-18 95.9 68 63.2
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 4.4e-18 95.9 68 63.2
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 4.4e-18 95.9 85 57.6
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 5.7e-18 95.5 167 39.5
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 5.7e-18 95.5 85 58.8
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 9.8e-18 94.7 209 36.4
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 9.8e-18 94.7 74 62.2
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 1.3e-17 94.4 180 36.1
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 1.3e-17 94.4 225 32.0
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 2.8e-17 93.2 88 55.7
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 6.3e-17 92.0 230 38.7
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 8.3e-17 91.7 79 58.2
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.1e-16 91.3 86 55.8
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 5.4e-16 89.0 206 33.0
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 3.5e-15 86.3 183 37.2
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 3.5e-15 86.3 183 37.2
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 3.5e-15 86.3 74 52.7
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 4.5e-15 85.9 181 35.9
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.0e-14 84.7 80 48.8
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.0e-14 84.7 80 48.8
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 1.3e-14 84.3 180 33.9
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 1.3e-14 84.3 180 33.9
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 3.8e-14 82.8 180 35.0
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 5.0e-14 82.4 300 36.3
CSS0039100 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D004590 1.9e-13 80.5 81 59.3
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 1.4e-11 74.3 84 46.4
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 9.2e-08 61.6 192 32.8
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 8.6e-06 55.1 184 28.3


User provided reference genes

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