Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 7.7e-75 284.3 207 100.0
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 7.7e-75 284.3 207 100.0
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.5e-54 216.9 205 81.0
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.7e-53 213.4 205 78.5
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 8.0e-48 194.5 206 78.6
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 3.4e-46 189.1 201 78.6
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 2.2e-45 186.4 204 73.5
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.4e-44 183.0 207 71.0
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.4e-44 183.0 207 71.0
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 4.1e-44 182.2 201 76.1
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 2.7e-43 179.5 199 74.9
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 3.5e-43 179.1 202 75.2
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 5.9e-43 178.3 199 74.4
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 7.8e-43 177.9 201 75.1
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 2.9e-42 176.0 205 76.1
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 3.8e-42 175.6 208 68.3
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 3.8e-42 175.6 198 72.7
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 8.6e-42 174.5 207 72.5
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 1.5e-41 173.7 201 75.6
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.9e-41 173.3 206 68.0
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 2.5e-41 172.9 211 67.8
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 2.5e-41 172.9 197 73.6
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 4.3e-41 172.2 205 74.1
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 5.6e-41 171.8 201 72.6
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 1.2e-40 170.6 211 67.3
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 1.6e-40 170.2 199 74.9
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.6e-40 170.2 201 72.1
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 1.6e-40 170.2 139 79.9
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 2.1e-40 169.9 204 71.6
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 2.8e-40 169.5 201 61.2
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 4.7e-40 168.7 199 75.9
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 4.7e-40 168.7 257 51.8
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 8.0e-40 167.9 200 73.0
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 1.0e-39 167.5 202 72.8
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 1.0e-39 167.5 202 72.8
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 4.0e-39 165.6 201 72.1
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 4.0e-39 165.6 227 67.4
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 6.8e-39 164.9 206 63.1
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 6.8e-39 164.9 213 68.1
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 8.9e-39 164.5 202 71.3
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 2.0e-38 163.3 207 69.6
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 3.4e-38 162.5 207 69.6
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 4.4e-38 162.2 199 72.4
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 5.8e-38 161.8 208 70.7
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 7.5e-38 161.4 200 72.0
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 7.5e-38 161.4 204 69.6
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 9.8e-38 161.0 198 74.7
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.7e-37 160.2 206 72.8
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 1.7e-37 160.2 206 71.8
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 1.7e-37 160.2 206 70.4
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 2.2e-37 159.8 199 72.4
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 2.9e-37 159.5 204 70.1
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 3.7e-37 159.1 218 66.5
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 3.7e-37 159.1 179 77.1
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 4.9e-37 158.7 197 70.6
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 4.9e-37 158.7 205 70.2
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 6.4e-37 158.3 201 68.2
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 6.4e-37 158.3 205 72.7
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 8.3e-37 157.9 202 69.3
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-36 157.5 205 72.2
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.1e-36 157.5 206 72.3
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 1.1e-36 157.5 205 69.3
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 1.4e-36 157.1 206 72.3
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 1.4e-36 157.1 206 69.4
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.4e-36 155.2 205 72.2
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 5.4e-36 155.2 203 69.0
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 5.4e-36 155.2 206 71.4
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 5.4e-36 155.2 187 76.5
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 7.0e-36 154.8 199 70.4
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 1.2e-35 154.1 203 69.5
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.2e-35 154.1 204 67.2
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 3.5e-35 152.5 203 69.0
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 4.6e-35 152.1 200 69.5
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 1.0e-34 151.0 203 70.0
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 1.0e-34 151.0 202 69.3
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.7e-34 150.2 204 64.7
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.3e-34 149.8 187 75.4
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 3.9e-34 149.1 201 62.2
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 3.9e-34 149.1 201 45.3
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 3.9e-34 149.1 203 70.0
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 5.0e-34 148.7 201 45.3
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 1.1e-33 147.5 198 65.7
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 1.5e-33 147.1 196 63.8
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 2.5e-33 146.4 201 70.1
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 2.5e-33 146.4 198 63.1
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 3.3e-33 146.0 200 63.0
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 4.3e-33 145.6 198 65.7
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 5.6e-33 145.2 201 44.3
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 5.6e-33 145.2 201 44.3
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 9.5e-33 144.4 200 61.5
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 1.6e-32 143.7 198 52.5
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.8e-32 142.9 200 66.0
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 1.4e-31 140.6 208 59.6
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 1.8e-31 140.2 191 70.2
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.3e-31 139.8 200 64.5
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 5.2e-31 138.7 198 62.6
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 8.9e-31 137.9 201 61.2
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 8.9e-31 137.9 190 43.7
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.5e-30 137.1 196 68.4
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 2.0e-30 136.7 202 50.5
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 2.0e-30 136.7 215 65.6
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 2.6e-30 136.3 200 66.0
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 9.8e-30 134.4 199 64.8
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 9.8e-30 134.4 205 65.4
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.3e-29 134.0 203 54.2
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 1.3e-29 134.0 201 65.7
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 1.4e-28 130.6 204 55.4
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 1.4e-28 130.6 200 60.5
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 9.2e-28 127.9 198 52.5
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 3.5e-27 125.9 160 73.1
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 1.3e-26 124.0 179 67.6
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 3.0e-26 122.9 139 84.2
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 3.3e-25 119.4 181 50.3
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.2e-24 117.5 213 52.1
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 2.6e-22 109.8 204 37.3
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.9e-21 105.5 204 52.5
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 8.3e-21 104.8 197 55.8
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 8.3e-21 104.8 197 55.8
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 1.4e-20 104.0 220 44.1
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 5.4e-20 102.1 197 53.8
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 5.4e-20 102.1 197 53.8
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 5.4e-20 102.1 197 53.8
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 5.4e-20 102.1 197 53.8
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 6.0e-19 98.6 204 38.7
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 6.0e-19 98.6 204 38.7
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 2.3e-18 96.7 212 43.9
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 3.9e-18 95.9 204 38.2
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 1.9e-17 93.6 204 37.7
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 2.5e-17 93.2 208 53.4
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-15 87.8 141 71.6
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.4e-15 87.4 145 68.3
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 1.4e-15 87.4 99 53.5
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 1.2e-14 84.3 139 66.2
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.5e-14 84.0 137 46.7
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 9.9e-14 81.3 138 47.1
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 6.4e-13 78.6 163 56.4
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 5.4e-12 75.5 58 67.2
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.1e-11 73.6 142 51.4
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 2.7e-11 73.2 79 51.9
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 3.5e-11 72.8 196 41.8
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 1.0e-10 71.2 185 53.5
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 5.6e-09 65.5 144 49.3
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 5.6e-09 65.5 121 56.2
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 1.6e-08 63.9 33 81.8
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 9.9e-06 54.7 197 27.4


User provided reference genes

Program Settings