Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.9e-243 844.7 413 100.0
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.5e-218 761.9 371 100.0
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 1.1e-184 650.2 406 78.3
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 1.4e-181 639.8 412 77.2
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 2.1e-180 636.0 402 78.1
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 2.3e-179 632.5 407 76.7
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.6e-177 626.3 414 75.4
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.6e-172 609.8 410 75.9
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 1.0e-171 607.1 413 73.8
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 2.6e-167 592.4 412 70.9
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 1.9e-165 586.3 411 70.3
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 9.4e-165 583.9 413 70.7
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 9.4e-165 583.9 413 70.5
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 2.7e-164 582.4 438 67.8
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 2.7e-164 582.4 412 71.1
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 1.8e-163 579.7 370 77.0
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.1e-163 578.2 413 69.7
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 6.7e-163 577.8 413 69.7
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.1e-162 577.0 412 68.7
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.3e-162 575.1 413 69.2
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 4.3e-162 575.1 395 72.2
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.7e-162 574.7 413 69.5
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 8.2e-161 570.9 408 69.6
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 8.2e-161 570.9 411 70.1
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 2.6e-159 565.8 406 68.0
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.5e-159 565.1 412 67.5
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 7.7e-159 564.3 371 76.3
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 1.3e-158 563.5 417 69.1
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.3e-158 563.5 414 67.9
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 2.9e-158 562.4 407 67.1
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 2.9e-158 562.4 407 67.1
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 2.5e-157 559.3 374 72.5
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 3.2e-157 558.9 410 67.6
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 9.4e-157 557.4 415 67.7
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 1.6e-156 556.6 413 67.6
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 2.7e-156 555.8 411 67.6
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 2.7e-156 555.8 385 70.4
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 1.4e-155 553.5 400 67.2
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 3.9e-155 552.0 373 70.8
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 3.9e-155 552.0 413 66.8
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 6.7e-155 551.2 387 70.3
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 1.1e-154 550.4 369 72.1
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 2.0e-154 549.7 411 67.2
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 2.6e-154 549.3 379 71.0
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 1.3e-153 547.0 378 69.3
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.7e-153 546.6 369 71.5
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.2e-153 546.2 392 67.6
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 2.2e-153 546.2 414 66.9
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.7e-153 545.4 398 68.1
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 3.7e-153 545.4 381 70.6
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 6.3e-153 544.7 389 67.9
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.8e-152 543.1 396 67.9
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 2.4e-152 542.7 414 66.9
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 3.1e-152 542.3 394 67.0
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 4.1e-152 542.0 405 65.2
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 5.3e-152 541.6 402 65.4
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 7.0e-152 541.2 396 67.7
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.2e-151 540.4 383 67.6
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 1.2e-151 540.4 412 64.8
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 1.2e-151 540.4 371 71.2
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.2e-151 540.4 394 67.3
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.6e-151 540.0 384 67.7
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.6e-151 540.0 384 67.7
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 1.6e-151 540.0 384 67.7
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 5.9e-151 538.1 383 67.6
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 5.9e-151 538.1 366 71.6
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 5.9e-151 538.1 408 66.9
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.0e-150 537.3 447 64.7
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.9e-150 535.8 386 67.9
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 5.0e-150 535.0 384 67.2
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 5.0e-150 535.0 384 67.2
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 6.5e-150 534.6 386 67.9
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 8.5e-150 534.3 402 64.7
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 1.5e-149 533.5 378 68.3
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 1.9e-149 533.1 380 67.1
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.5e-149 532.7 412 66.7
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 3.2e-149 532.3 383 66.8
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 5.5e-149 531.6 395 65.3
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 5.5e-149 531.6 417 65.5
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 8.0e-148 527.7 394 65.7
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 8.0e-148 527.7 415 63.4
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 1.4e-147 526.9 383 66.8
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 3.0e-147 525.8 383 66.3
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 6.7e-147 524.6 421 65.8
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 2.0e-146 523.1 383 65.8
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 1.3e-145 520.4 415 62.2
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 6.3e-145 518.1 405 65.4
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.4e-144 516.9 383 68.4
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 2.4e-144 516.2 406 63.3
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 5.3e-144 515.0 379 66.0
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 7.0e-144 514.6 381 65.6
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 9.1e-144 514.2 436 59.6
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.6e-143 513.5 407 62.7
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 3.2e-141 505.8 371 66.0
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 2.7e-140 502.7 386 63.5
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 6.8e-139 498.0 369 65.9
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 1.0e-134 484.2 376 62.5
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 7.2e-133 478.0 368 62.5
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 3.0e-131 472.6 398 60.8
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 6.8e-131 471.5 403 60.8
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 3.4e-130 469.2 385 62.9
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.7e-129 466.8 336 67.3
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 7.7e-127 458.0 383 59.8
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 7.7e-127 458.0 383 59.8
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 9.5e-125 451.1 362 61.0
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 2.6e-122 443.0 383 58.2
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.3e-121 440.7 291 72.2
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 2.2e-121 439.9 379 58.6
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 1.9e-117 426.8 280 71.4
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 2.5e-117 426.4 280 71.4
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 7.3e-117 424.9 379 56.5
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.2e-114 417.5 409 55.5
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 8.3e-113 411.4 382 53.7
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.7e-111 406.4 384 54.4
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 2.5e-109 399.8 390 53.1
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 7.3e-109 398.3 261 72.0
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 9.5e-109 397.9 356 61.0
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 3.6e-108 396.0 636 40.3
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 1.1e-107 394.4 389 50.9
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 6.8e-107 391.7 255 72.2
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 2.6e-106 389.8 271 67.5
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 1.4e-104 384.0 403 50.6
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.9e-104 383.6 237 76.4
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 1.6e-100 370.5 252 69.8
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 5.8e-98 362.1 253 66.8
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 2.2e-97 360.1 391 46.5
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 1.4e-96 357.5 251 66.1
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 2.4e-96 356.7 252 65.9
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.5e-95 352.8 384 50.8
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 1.2e-92 344.4 281 62.6
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 1.8e-91 340.5 280 61.1
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 2.2e-89 333.6 393 44.8
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.3e-85 319.7 251 64.5
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 5.3e-83 312.4 361 47.1
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 9.3e-80 301.6 195 72.8
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 2.6e-66 256.9 160 77.5
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.6e-60 237.7 282 50.4
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.0e-54 218.4 215 55.3
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.4e-51 208.0 135 77.8
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.3e-49 201.4 215 47.9
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.0e-46 191.8 106 84.0
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 4.7e-39 166.4 143 57.3
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 7.4e-37 159.1 141 56.7
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 1.3e-36 158.3 401 31.9
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.1e-35 155.2 176 51.7
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 8.5e-33 145.6 161 49.1
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.8e-30 137.9 363 28.7
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 2.4e-27 127.5 296 31.8
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 7.7e-26 122.5 99 59.6
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 1.4e-22 111.7 327 31.8
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 1.2e-21 108.6 70 64.3
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 1.4e-19 101.7 93 55.9
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 2.0e-18 97.8 93 53.8
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 2.2e-17 94.4 93 52.7
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 2.2e-17 94.4 84 51.2
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 2.9e-09 67.4 54 55.6
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 3.8e-09 67.0 52 57.7
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 4.3e-08 63.5 55 52.7
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 1.2e-07 62.0 65 50.8


User provided reference genes

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