Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.9e-73 277.7 140 100.0
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 9.2e-56 220.3 127 83.5
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.2e-55 219.9 131 78.6
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 2.1e-55 219.2 122 85.2
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 3.5e-55 218.4 137 78.1
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 4.6e-55 218.0 137 78.8
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 1.7e-54 216.1 137 77.4
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.7e-54 216.1 133 78.2
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.3e-54 215.7 126 81.7
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 3.9e-54 214.9 128 78.1
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 3.9e-54 214.9 121 83.5
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 3.9e-54 214.9 123 82.9
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 6.6e-54 214.2 137 77.4
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.1e-53 213.4 122 81.1
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.5e-53 213.0 126 80.2
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 2.5e-53 212.2 128 77.3
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 4.3e-53 211.5 137 76.6
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 7.3e-53 210.7 122 82.0
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 7.3e-53 210.7 122 82.0
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 7.3e-53 210.7 137 75.2
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.2e-52 209.9 126 81.0
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 2.8e-52 208.8 122 78.7
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 2.8e-52 208.8 126 78.6
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 6.2e-52 207.6 137 73.7
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 8.1e-52 207.2 119 80.7
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.1e-51 206.8 119 80.7
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.4e-51 206.5 120 80.8
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 1.8e-51 206.1 122 77.9
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.8e-51 206.1 127 77.2
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.8e-51 206.1 128 77.3
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.3e-51 205.7 119 81.5
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.0e-51 204.9 132 75.0
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 5.2e-51 204.5 139 72.7
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.8e-51 204.1 128 76.6
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 8.9e-51 203.8 126 79.4
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 8.9e-51 203.8 128 76.6
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 8.9e-51 203.8 119 81.5
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.2e-50 203.4 119 79.0
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.2e-50 203.4 126 77.0
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-50 203.4 126 77.0
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.0e-50 202.6 125 76.0
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 2.6e-50 202.2 122 78.7
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.4e-50 201.8 122 79.5
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 5.8e-50 201.1 126 75.4
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.8e-50 201.1 119 79.0
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.9e-50 200.3 119 79.8
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 9.9e-50 200.3 119 77.3
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.3e-49 199.9 119 78.2
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.3e-49 199.9 122 77.0
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.3e-49 199.9 119 77.3
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.7e-49 199.5 128 75.0
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.7e-49 199.5 121 77.7
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.2e-49 199.1 137 71.5
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.9e-49 198.7 119 79.0
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.9e-49 198.7 119 79.0
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 3.8e-49 198.4 125 74.4
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 4.9e-49 198.0 128 74.2
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 6.4e-49 197.6 121 76.9
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.4e-49 197.6 128 74.2
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 8.4e-49 197.2 126 74.6
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.1e-48 196.8 128 73.4
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.4e-48 196.4 132 71.2
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 5.4e-48 194.5 125 75.2
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.2e-48 193.7 119 77.3
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.2e-47 193.4 123 72.4
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.6e-47 193.0 126 73.0
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.6e-47 193.0 133 69.2
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 2.7e-47 192.2 119 77.3
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.0e-46 190.3 119 76.5
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 2.3e-46 189.1 123 69.9
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.0e-46 188.7 123 70.7
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.9e-45 186.0 125 72.0
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.5e-45 185.7 125 72.0
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 5.6e-45 184.5 117 74.4
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 5.6e-45 184.5 128 71.9
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 7.3e-45 184.1 119 75.6
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.1e-44 182.6 119 71.4
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 2.8e-44 182.2 117 73.5
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.6e-44 181.8 102 86.3
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.6e-44 181.8 102 86.3
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 4.7e-44 181.4 117 75.2
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.1e-43 180.3 121 68.6
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 1.1e-43 180.3 120 69.2
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 3.1e-43 178.7 123 66.7
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 3.1e-43 178.7 117 72.6
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 6.9e-43 177.6 117 73.5
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.6e-42 175.6 119 68.1
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.4e-42 175.3 125 64.8
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 3.4e-42 175.3 117 72.6
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 3.4e-42 175.3 120 70.8
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.4e-42 174.9 125 63.2
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.4e-42 174.9 117 72.6
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.8e-42 174.5 123 65.9
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 5.8e-42 174.5 124 63.7
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.7e-41 172.9 117 68.4
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.2e-41 172.6 121 65.3
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 2.9e-41 172.2 123 61.8
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 3.8e-41 171.8 121 62.0
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 4.9e-41 171.4 109 73.4
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.1e-40 170.2 117 66.7
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 1.4e-40 169.9 122 68.9
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.4e-40 169.9 120 68.3
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 2.4e-40 169.1 125 64.0
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 2.4e-40 169.1 121 59.5
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 2.4e-40 169.1 116 69.8
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.2e-40 168.3 105 77.1
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 4.2e-40 168.3 118 67.8
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 7.1e-40 167.5 117 68.4
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 9.3e-40 167.2 119 68.9
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 9.3e-40 167.2 120 65.0
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.2e-39 166.8 107 70.1
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.2e-39 166.8 130 63.1
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.6e-39 166.4 125 65.6
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.1e-39 166.0 109 72.5
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 2.1e-39 166.0 124 57.3
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 7.8e-39 164.1 118 65.3
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.7e-38 162.9 125 63.2
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 2.3e-38 162.5 120 65.0
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 3.0e-38 162.2 121 62.8
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 3.0e-38 162.2 121 62.8
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 3.0e-38 162.2 121 62.8
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.9e-38 161.8 135 56.3
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 8.7e-38 160.6 121 62.8
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.1e-37 160.2 138 55.8
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.5e-37 159.8 121 62.0
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.5e-37 159.8 121 62.0
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.9e-37 159.5 123 61.8
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.9e-37 159.5 121 62.8
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.9e-37 159.5 109 69.7
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 4.3e-37 158.3 118 61.9
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 9.6e-37 157.1 121 62.0
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.6e-36 156.4 135 58.5
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.8e-36 155.6 118 61.9
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 3.6e-36 155.2 122 59.0
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 4.8e-36 154.8 137 59.9
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 4.8e-36 154.8 120 59.2
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 6.2e-36 154.5 117 62.4
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.1e-35 153.7 126 59.5
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.1e-35 153.7 126 59.5
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.1e-35 153.7 120 60.0
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 2.4e-35 152.5 116 62.1
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 9.0e-35 150.6 118 67.8
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 1.2e-34 150.2 127 55.1
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.5e-34 149.8 118 58.5
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 2.0e-34 149.4 118 59.3
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.6e-34 149.1 126 57.1
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.4e-34 148.7 122 58.2
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.4e-34 148.7 126 56.3
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.4e-34 148.7 118 57.6
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 2.2e-33 146.0 116 57.8
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 8.4e-33 144.1 126 54.0
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.1e-32 143.7 122 55.7
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 3.2e-32 142.1 137 54.0
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.7e-31 139.0 125 51.2
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.7e-31 139.0 99 66.7
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.9e-29 132.9 125 52.8
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.6e-28 128.6 68 95.6
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.4e-27 125.9 116 50.9
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 3.1e-27 125.6 104 58.7
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 7.6e-26 120.9 66 86.4
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 7.4e-21 104.4 62 79.0
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 7.4e-21 104.4 62 79.0
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 8.1e-20 100.9 58 81.0
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.2e-18 97.1 81 63.0
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 6.5e-17 91.3 61 72.1
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 1.4e-16 90.1 61 72.1
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.4e-16 90.1 62 69.4
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 9.3e-16 87.4 53 69.8
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.2e-15 87.0 53 77.4
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 2.1e-15 86.3 112 36.6
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.1e-15 86.3 64 68.8
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 3.5e-15 85.5 51 84.3
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.1e-13 80.5 62 54.8
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.9e-13 79.7 59 66.1
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 9.6e-13 77.4 122 34.4
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 6.3e-12 74.7 63 57.1
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 6.5e-09 64.7 61 47.5
arahy.Tifrunner.gnm1.ann1.P0I4D3 Arachis hypogaea HOM05D003887 ORTHO05D004523 5.1e-06 55.1 37 73.0


User provided reference genes

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