Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.2e-171 603.6 332 100.0
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-152 543.5 308 96.8
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-114 417.2 319 75.9
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 2.2e-108 396.4 323 72.8
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.4e-101 372.5 345 65.2
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 8.5e-100 367.9 345 63.8
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.1e-99 367.5 322 68.6
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.4e-94 350.5 322 66.8
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.0e-88 330.1 321 63.6
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 8.2e-87 324.7 322 62.7
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 9.1e-86 321.2 322 61.8
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 9.1e-86 321.2 322 61.8
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 2.9e-84 316.2 332 60.2
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.5e-83 313.9 318 61.6
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 7.2e-83 311.6 319 62.4
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.6e-82 310.5 314 60.5
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 2.1e-82 310.1 320 62.5
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 2.7e-82 309.7 315 60.0
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 3.6e-82 309.3 323 60.7
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 1.0e-81 307.8 322 62.4
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 4.0e-81 305.8 320 61.2
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 8.8e-81 304.7 318 60.1
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 3.3e-80 302.8 356 55.6
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 9.7e-80 301.2 315 59.7
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 9.7e-80 301.2 244 68.9
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.3e-79 300.8 321 60.1
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.7e-79 300.4 328 59.1
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 3.7e-79 299.3 326 57.7
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 4.8e-79 298.9 328 59.1
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 6.3e-79 298.5 315 60.3
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 3.5e-77 292.7 357 53.8
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.0e-76 291.2 315 58.7
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.0e-76 288.9 314 56.7
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.5e-76 288.5 314 57.3
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 6.5e-76 288.5 316 57.9
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.1e-75 287.7 312 58.7
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.5e-75 287.3 323 57.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.5e-75 286.6 319 58.6
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.5e-75 286.6 319 58.9
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 9.4e-75 284.6 308 61.0
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.1e-74 283.5 314 57.0
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 2.7e-74 283.1 316 60.4
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 4.7e-74 282.3 315 60.6
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 6.1e-74 282.0 329 58.1
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 8.0e-74 281.6 331 58.0
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.8e-73 280.4 313 57.2
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 5.2e-73 278.9 319 56.7
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.6e-72 276.6 319 56.4
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 3.4e-72 276.2 327 54.1
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.4e-72 276.2 319 56.1
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 4.4e-72 275.8 352 51.4
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 7.5e-72 275.0 331 55.3
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 7.5e-72 275.0 330 57.3
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 7.5e-72 275.0 339 56.9
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 1.3e-71 274.2 302 57.9
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.2e-71 273.5 322 54.0
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 9.1e-70 268.1 333 54.1
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.2e-69 267.7 273 63.0
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.2e-69 267.7 273 63.0
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.0e-69 266.9 320 54.7
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 7.7e-69 265.0 303 55.1
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 1.0e-68 264.6 330 54.2
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.3e-68 263.5 357 52.1
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.5e-67 260.8 312 56.7
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 9.5e-67 258.1 306 56.2
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 9.5e-67 258.1 352 52.6
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.1e-66 256.9 313 54.6
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.1e-66 256.9 236 65.3
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 2.8e-66 256.5 273 61.5
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 8.0e-66 255.0 323 55.7
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.0e-65 254.6 319 53.3
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 6.8e-65 251.9 218 67.4
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 6.8e-65 251.9 239 64.4
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 6.8e-65 251.9 331 52.3
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 8.9e-65 251.5 308 56.5
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 2.6e-64 250.0 307 52.8
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 4.4e-64 249.2 284 54.6
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 7.5e-64 248.4 307 52.8
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 2.2e-63 246.9 364 48.6
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 3.7e-63 246.1 321 51.4
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 6.3e-63 245.4 315 56.2
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 5.4e-62 242.3 319 49.5
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 7.0e-62 241.9 261 59.8
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.6e-61 240.7 321 53.6
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 1.7e-60 237.3 297 54.9
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.7e-60 237.3 336 52.4
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 3.8e-60 236.1 312 54.8
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 8.6e-60 235.0 327 50.2
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.9e-59 233.8 309 51.8
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.5e-59 233.4 322 48.1
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 5.6e-59 232.3 313 53.7
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 5.6e-59 232.3 326 52.1
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 1.6e-58 230.7 309 52.8
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.6e-58 230.7 310 52.9
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.6e-58 230.7 324 50.3
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 1.6e-58 230.7 320 52.8
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 6.1e-58 228.8 327 52.3
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.0e-57 228.0 313 53.0
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.3e-57 226.9 307 52.1
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.3e-57 226.9 307 52.1
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 3.0e-57 226.5 323 48.3
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.2e-56 224.6 307 52.1
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 1.2e-56 224.6 307 52.1
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-56 224.6 198 70.2
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-56 224.6 198 70.2
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.5e-56 224.2 307 51.5
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 2.0e-56 223.8 306 51.3
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.7e-55 220.7 298 51.0
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 2.9e-55 219.9 325 46.8
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 4.9e-55 219.2 323 48.3
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 6.4e-55 218.8 357 46.5
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.1e-54 218.0 305 50.5
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 2.4e-54 216.9 313 48.6
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-53 214.5 210 64.8
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.0e-53 213.8 357 46.2
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.9e-51 207.2 295 45.8
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 4.3e-51 206.1 324 46.6
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 4.4e-48 196.1 329 44.1
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.7e-47 194.1 316 42.1
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 7.8e-45 185.3 323 46.7
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.0e-44 183.3 194 60.8
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.6e-44 182.2 194 60.8
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 6.6e-44 182.2 220 52.7
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.6e-44 181.8 194 60.3
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-43 181.4 194 60.3
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.3e-43 179.9 194 59.8
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.3e-43 179.5 194 60.3
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.6e-42 177.6 248 53.2
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 1.3e-39 167.9 155 63.9
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.4e-38 164.5 320 44.1
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 2.4e-38 163.7 227 49.8
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 7.8e-37 158.7 263 44.5
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.3e-35 152.9 194 53.6
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 2.1e-34 150.6 334 38.6
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 6.2e-34 149.1 325 40.6
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.5e-32 144.4 106 72.6
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 2.0e-32 144.1 326 39.6
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 2.6e-32 143.7 232 44.4
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.9e-31 140.2 252 41.7
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 8.4e-31 138.7 201 46.3
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.3e-28 131.3 95 74.7
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 5.8e-24 115.9 200 47.0
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 4.9e-23 112.8 99 67.7
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 4.9e-23 112.8 99 66.7
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 4.2e-14 83.2 68 69.1
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 4.6e-13 79.7 177 42.4
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.8e-12 77.8 100 55.0
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-12 77.4 49 77.6
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 1.9e-11 74.3 199 32.7
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 2.1e-10 70.9 76 60.5
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 1.4e-09 68.2 164 40.2
AagrBONN_evm.TU.Sc2ySwM_117.2428 Anthoceros agrestis HOM05D025386 ORTHO05D026614 6.4e-07 59.3 173 29.5
FvH4_3g38640 Fragaria vesca HOM05D037407 ORTHO05D035386 7.1e-06 55.8 66 56.1
FvH4_3g16370 Fragaria vesca HOM05D037407 ORTHO05D035386 9.3e-06 55.5 71 47.9


User provided reference genes

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