Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042763 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 1.2e-58 229.6 110 100.0
CSS0049852 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 2.0e-45 185.7 113 83.2
CSS0015425 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 2.4e-43 178.7 113 78.8
CSS0032606 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 1.2e-34 149.8 110 73.6
CSS0028771 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 8.9e-30 133.7 113 67.3
Dinv13353 Davidia involucrata HOM05D000590 ORTHO05D006658 6.9e-14 80.9 52 75.0
Dinv26700 Davidia involucrata HOM05D000943 ORTHO05D006658 6.9e-14 80.9 52 78.8
Thecc.07G135100 Theobroma cacao HOM05D000590 ORTHO05D006658 5.8e-13 77.8 52 73.1
Ciclev10021099m.g Citrus clementina HOM05D000590 ORTHO05D006658 9.9e-13 77.0 51 74.5
Atru.chr2.1901 Acer truncatum HOM05D000590 ORTHO05D006658 1.3e-12 76.6 50 72.0
Hund10399 Selenicereus undatus HOM05D000590 ORTHO05D006658 1.7e-12 76.3 50 76.0
Aqoxy1G01876 Aquilegia oxysepala HOM05D000590 ORTHO05D006658 2.2e-12 75.9 50 68.0
Gohir.A04G045500 Gossypium hirsutum HOM05D000590 ORTHO05D006658 2.2e-12 75.9 49 73.5
Gohir.D05G337300 Gossypium hirsutum HOM05D000590 ORTHO05D006658 2.2e-12 75.9 49 73.5
Gorai.009G361500 Gossypium raimondii HOM05D000590 ORTHO05D006658 2.2e-12 75.9 49 73.5
Actinidia12609 Actinidia chinensis HOM05D000590 ORTHO05D006658 2.9e-12 75.5 52 71.2
PSO675G2935 Papaver somniferum HOM05D000590 ORTHO05D006658 2.9e-12 75.5 52 71.2
Oeu005375.1 Olea europaea HOM05D000590 ORTHO05D006658 3.8e-12 75.1 52 67.3
THA.LOC104822584 Tarenaya hassleriana HOM05D000590 ORTHO05D006658 3.8e-12 75.1 51 64.7
GSVIVG01014083001 Vitis vinifera HOM05D000590 ORTHO05D006658 3.8e-12 75.1 51 72.5
TWI39G0773 Tripterygium wilfordii HOM05D000590 ORTHO05D006658 4.9e-12 74.7 49 71.4
PSO541G5312 Papaver somniferum HOM05D000590 ORTHO05D006658 6.4e-12 74.3 52 69.2
QL08p025144 Quercus lobata HOM05D000590 ORTHO05D006658 6.4e-12 74.3 51 68.6
Haze_08447 Corylus avellana HOM05D000590 ORTHO05D006658 8.4e-12 73.9 52 69.2
Ah.06g187630 Amaranthus hybridus HOM05D000590 ORTHO05D006658 1.1e-11 73.6 51 70.6
EL10Ac4g08438 Beta vulgaris HOM05D000590 ORTHO05D006658 1.1e-11 73.6 51 66.7
COL.COLO4_17463 Corchorus olitorius HOM05D000590 ORTHO05D006658 1.1e-11 73.6 52 69.2
DCAR_019620 Daucus carota HOM05D000590 ORTHO05D006658 1.4e-11 73.2 51 68.6
Duzib213G0379 Durio zibethinus HOM05D000590 ORTHO05D006658 1.4e-11 73.2 51 70.6
TAR627G0624 Trochodendron aralioides HOM05D000590 ORTHO05D006658 1.4e-11 73.2 52 71.2
BcaB06g25360 Brassica carinata HOM05D000590 ORTHO05D006658 2.4e-11 72.4 52 63.5
PGR031G2043 Punica granatum HOM05D000590 ORTHO05D006658 3.2e-11 72.0 50 70.0
THA.LOC104815580 Tarenaya hassleriana HOM05D000590 ORTHO05D006658 4.2e-11 71.6 52 65.4
TWI38G1174 Tripterygium wilfordii HOM05D000590 ORTHO05D006658 4.2e-11 71.6 50 72.0
Aqoxy6G01959 Aquilegia oxysepala HOM05D000590 ORTHO05D006658 5.4e-11 71.2 50 64.0
Manes.03G078000 Manihot esculenta HOM05D000590 ORTHO05D006658 5.4e-11 71.2 51 68.6
CiPaw.11G155300 Carya illinoinensis HOM05D000590 ORTHO05D006658 7.1e-11 70.9 50 68.0
Nn6g34385 Nelumbo nucifera HOM05D000590 ORTHO05D006658 7.1e-11 70.9 52 67.3
vmacro11976 Vaccinium macrocarpon HOM05D000590 ORTHO05D006658 7.1e-11 70.9 47 74.5
MSTRG.6694 Avicennia marina HOM05D000590 ORTHO05D006658 9.3e-11 70.5 52 65.4
AUR62013940 Chenopodium quinoa HOM05D000590 ORTHO05D006658 9.3e-11 70.5 48 70.8
ClCG11G017110 Citrullus lanatus HOM05D000590 ORTHO05D006658 1.2e-10 70.1 50 66.0
CsaV3_4G032770 Cucumis sativus L. HOM05D000590 ORTHO05D006658 1.2e-10 70.1 50 66.0
Sc07g0002360 Simmondsia chinensis HOM05D000590 ORTHO05D006658 2.1e-10 69.3 46 67.4
Potri.011G103100 Populus trichocarpa HOM05D000590 ORTHO05D006658 2.7e-10 68.9 51 62.7
MELO3C025676.2 Cucumis melo HOM05D000590 ORTHO05D006658 3.5e-10 68.6 50 64.0
AUR62019672 Chenopodium quinoa HOM05D000590 ORTHO05D006658 4.6e-10 68.2 48 68.8
Sabra11G0077600 Salix brachista HOM05D000590 ORTHO05D006658 4.6e-10 68.2 51 62.7
Potri.001G382500 Populus trichocarpa HOM05D000590 ORTHO05D006658 6.0e-10 67.8 51 62.7
AL3G27050 Arabidopsis lyrata HOM05D000590 ORTHO05D006658 7.8e-10 67.4 52 59.6
Sopen07g030360 Solanum pennellii HOM05D000590 ORTHO05D006658 7.8e-10 67.4 48 66.7
Eucgr.F03226 Eucalyptus grandis HOM05D000590 ORTHO05D006658 1.0e-09 67.0 50 62.0
Migut.H02030 Erythranthe guttata HOM05D000590 ORTHO05D006658 1.3e-09 66.6 53 62.3
A05p34710 Brassica napus HOM05D000590 ORTHO05D006658 1.7e-09 66.2 47 61.7
Sed0014657 Sechium edule HOM05D000590 ORTHO05D006658 1.7e-09 66.2 48 62.5
Glyma.15G210600 Glycine max HOM05D000590 ORTHO05D006658 2.3e-09 65.9 50 62.0
Solyc07g062100.4 Solanum lycopersicum HOM05D000590 ORTHO05D006658 2.3e-09 65.9 48 66.7
PGSC0003DMG400007086 Solanum tuberosum HOM05D000590 ORTHO05D006658 2.3e-09 65.9 48 66.7
BcaC05g29040 Brassica carinata HOM05D000590 ORTHO05D006658 3.0e-09 65.5 47 59.6
C05p52510 Brassica napus HOM05D000590 ORTHO05D006658 3.0e-09 65.5 47 59.6
BolC5t33934H Brassica oleracea HOM05D000590 ORTHO05D006658 3.0e-09 65.5 47 59.6
SGA_v2.0_scaffold130G34256 Striga asiatica HOM05D000590 ORTHO05D006658 3.9e-09 65.1 48 64.6
CANSAT56G2009 Cannabis sativa HOM05D000590 ORTHO05D006658 5.1e-09 64.7 47 61.7
HanXRQChr11g0330421 Helianthus annuus HOM05D000590 ORTHO05D006658 6.6e-09 64.3 48 66.7
BraA05t22287Z Brassica rapa HOM05D000590 ORTHO05D006658 8.7e-09 63.9 46 60.9
Sabra11G0082500 Salix brachista HOM05D000590 ORTHO05D006658 8.7e-09 63.9 51 60.8
MBI02_g37325_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006658 1.1e-08 63.5 50 60.0
VMungo1127G1365 Vigna mungo HOM05D000590 ORTHO05D006658 1.9e-08 62.8 50 58.0
CSS0047038 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006658 3.3e-08 62.0 118 45.8
Cc05_g10610 Coffea canephora HOM05D000590 ORTHO05D006658 3.3e-08 62.0 52 55.8
MD03G1251300 Malus domestica HOM05D000590 ORTHO05D006658 3.3e-08 62.0 47 57.4
Phvul.011G170000 Phaseolus vulgaris HOM05D000590 ORTHO05D006658 3.3e-08 62.0 50 56.0
Zm00001eb122030 Zea mays HOM05D000590 ORTHO05D006658 3.3e-08 62.0 45 62.2
ECA236G0454 Erigeron canadensis HOM05D000590 ORTHO05D006658 5.6e-08 61.2 50 60.0
Lsat_1_v5_gn_7_100300 Lactuca sativa HOM05D000590 ORTHO05D006658 5.6e-08 61.2 48 64.6
Prupe.4G155300 Prunus persica HOM05D000590 ORTHO05D006658 5.6e-08 61.2 47 57.4
Thhalv10021064m.g Eutrema salsugineum HOM05D000590 ORTHO05D006658 7.3e-08 60.8 52 55.8
Aa31LG8G1960 Aethionema arabicum HOM05D000590 ORTHO05D006658 9.6e-08 60.5 52 53.8
FvH4_3g17540 Fragaria vesca HOM05D000590 ORTHO05D006658 9.6e-08 60.5 47 57.4
FAN16G1913 Fragaria x ananassa HOM05D000590 ORTHO05D006658 9.6e-08 60.5 47 57.4
FAN21G3792 Fragaria x ananassa HOM05D000590 ORTHO05D006658 9.6e-08 60.5 47 57.4
FAN25G1530 Fragaria x ananassa HOM05D000590 ORTHO05D006658 9.6e-08 60.5 47 57.4
RcHm_v2.0_Chr5g0029281 Rosa chinensis HOM05D000590 ORTHO05D006658 9.6e-08 60.5 47 57.4
Sp3g12970 Schrenkiella parvula HOM05D000590 ORTHO05D006658 9.6e-08 60.5 51 54.9
BcaC09g48444 Brassica carinata HOM05D000590 ORTHO05D006658 1.3e-07 60.1 49 51.0
C01p49700 Brassica napus HOM05D000590 ORTHO05D006658 1.3e-07 60.1 49 51.0
FAN11G1469 Fragaria x ananassa HOM05D000590 ORTHO05D006658 1.3e-07 60.1 47 57.4
CARHR089680 Cardamine hirsuta HOM05D000590 ORTHO05D006658 1.6e-07 59.7 52 53.8
AT3G14740 Arabidopsis thaliana HOM05D000590 ORTHO05D006658 2.1e-07 59.3 52 53.8
A01p39070 Brassica napus HOM05D000590 ORTHO05D006658 2.1e-07 59.3 47 51.1
Carub.0003s1441 Capsella rubella HOM05D000590 ORTHO05D006658 2.1e-07 59.3 52 57.7
arahy.Tifrunner.gnm1.ann1.14DVUV Arachis hypogaea HOM05D000590 ORTHO05D006658 2.8e-07 58.9 48 56.2
arahy.Tifrunner.gnm1.ann1.4S3ZRX Arachis hypogaea HOM05D000590 ORTHO05D006658 2.8e-07 58.9 48 56.2
Lj8P145T49 Lonicera japonica HOM05D000590 ORTHO05D006658 6.2e-07 57.8 52 61.5
CDE02G4695 Ceratophyllum demersum HOM05D000590 ORTHO05D006658 8.1e-07 57.4 51 51.0
Glyma.15G211600 Glycine max HOM05D000590 ORTHO05D006658 8.1e-07 57.4 50 58.0
RcHm_v2.0_Chr5g0029161 Rosa chinensis HOM05D000590 ORTHO05D006658 1.1e-06 57.0 47 53.2
TPR.G16489 Trifolium pratense HOM05D000590 ORTHO05D006658 1.1e-06 57.0 48 56.2
Lalb_Chr01g0006941 Lupinus albus HOM05D000590 ORTHO05D006658 5.3e-06 54.7 50 50.0
HPP92_021749 Vanilla planifolia HOM05D000590 ORTHO05D006658 6.9e-06 54.3 48 52.1


User provided reference genes

Program Settings