Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042733 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D012543 4.5e-31 137.1 62 100.0
CSS0010607 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D012543 5.0e-30 133.7 62 96.8
Dinv29669 Davidia involucrata HOM05D000421 ORTHO05D012543 2.2e-09 65.1 40 67.5
Atru.chr6.352 Acer truncatum HOM05D000421 ORTHO05D001007 6.4e-09 63.5 40 67.5
Atru.chr6.401 Acer truncatum HOM05D000421 ORTHO05D001007 6.4e-09 63.5 40 67.5
Ciclev10001347m.g Citrus clementina HOM05D000421 ORTHO05D001007 1.1e-08 62.8 40 62.5
CSS0000418 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D001007 1.4e-08 62.4 36 69.4
Rhsim05G0116300 Rhododendron simsii HOM05D000421 ORTHO05D001007 1.4e-08 62.4 40 65.0
CiPaw.05G002400 Carya illinoinensis HOM05D000421 ORTHO05D001007 1.9e-08 62.0 37 70.3
TWI23G0288 Tripterygium wilfordii HOM05D000421 ORTHO05D001007 1.9e-08 62.0 40 65.0
Thecc.02G012700 Theobroma cacao HOM05D000421 ORTHO05D001007 2.4e-08 61.6 40 60.0
Hma1.2p1_0052F.1_g029910 Hydrangea macrophylla HOM05D000421 ORTHO05D001007 3.2e-08 61.2 36 69.4
CSS0050332 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D012543 5.4e-08 60.5 36 66.7
PGR142G0493 Punica granatum HOM05D000421 ORTHO05D001007 7.1e-08 60.1 40 60.0
GSVIVG01023201001 Vitis vinifera HOM05D000421 ORTHO05D001007 7.1e-08 60.1 34 70.6
Cfa006271 Carpinus fangiana HOM05D000421 ORTHO05D001007 9.2e-08 59.7 38 55.3
COL.COLO4_17686 Corchorus olitorius HOM05D000421 ORTHO05D001007 9.2e-08 59.7 40 60.0
arahy.Tifrunner.gnm1.ann1.EJ63DC Arachis hypogaea HOM05D000421 ORTHO05D001007 1.2e-07 59.3 40 60.0
arahy.Tifrunner.gnm1.ann1.EL08VQ Arachis hypogaea HOM05D000421 ORTHO05D001007 1.2e-07 59.3 40 60.0
arahy.Tifrunner.gnm1.ann1.KNL5MS Arachis hypogaea HOM05D000421 ORTHO05D001007 1.6e-07 58.9 39 56.4
arahy.Tifrunner.gnm1.ann1.T80YM6 Arachis hypogaea HOM05D000421 ORTHO05D001007 1.6e-07 58.9 39 56.4
Actinidia00155 Actinidia chinensis HOM05D000421 ORTHO05D001007 2.1e-07 58.5 30 76.7
QL01p048954 Quercus lobata HOM05D000421 ORTHO05D012543 2.1e-07 58.5 39 53.8
CDE04G1291 Ceratophyllum demersum HOM05D000421 ORTHO05D001007 3.5e-07 57.8 35 62.9
CDE06G1248 Ceratophyllum demersum HOM05D000421 ORTHO05D001007 3.5e-07 57.8 38 55.3
Cc02_g23460 Coffea canephora HOM05D000421 ORTHO05D012543 3.5e-07 57.8 40 57.5
Manes.10G110400 Manihot esculenta HOM05D000421 ORTHO05D001007 3.5e-07 57.8 37 64.9
Oeu000150.1 Olea europaea HOM05D000421 ORTHO05D001007 3.5e-07 57.8 40 60.0
Cpa.g.sc113.3 Carica papaya HOM05D000421 ORTHO05D001007 4.6e-07 57.4 40 55.0
Haze_04542 Corylus avellana HOM05D000421 ORTHO05D001007 4.6e-07 57.4 38 52.6
Duzib052G0429 Durio zibethinus HOM05D000421 ORTHO05D001007 4.6e-07 57.4 37 59.5
Ca_00025_v3 Cicer arietinum L. HOM05D000421 ORTHO05D001007 6.0e-07 57.0 40 57.5
Phvul.006G221000 Phaseolus vulgaris HOM05D000421 ORTHO05D001007 1.0e-06 56.2 40 57.5
Phvul.007G147300 Phaseolus vulgaris HOM05D000421 ORTHO05D012543 1.0e-06 56.2 40 57.5
Lj6g0014757 Lotus japonicus HOM05D000421 ORTHO05D001007 1.3e-06 55.8 39 59.0
Rhsim09G0129500 Rhododendron simsii HOM05D000421 ORTHO05D001007 1.3e-06 55.8 38 52.6
TPR.G2129 Trifolium pratense HOM05D000421 ORTHO05D001007 1.3e-06 55.8 40 55.0
Nn1g09789 Nelumbo nucifera HOM05D000421 ORTHO05D001007 1.7e-06 55.5 36 55.6
Prupe.1G583200 Prunus persica HOM05D000421 ORTHO05D001007 1.7e-06 55.5 35 65.7
RcHm_v2.0_Chr6g0282241 Rosa chinensis HOM05D000421 ORTHO05D001007 1.7e-06 55.5 37 59.5
FAN15G0933 Fragaria x ananassa HOM05D000421 ORTHO05D001007 2.3e-06 55.1 37 56.8
FAN27G1947 Fragaria x ananassa HOM05D000421 ORTHO05D001007 2.3e-06 55.1 37 56.8
FAN27G3150 Fragaria x ananassa HOM05D000421 ORTHO05D001007 2.3e-06 55.1 37 56.8
Nitab4.5_0000038g0220 Nicotiana tabacum HOM05D000421 ORTHO05D001007 2.3e-06 55.1 36 58.3
Nitab4.5_0005686g0020 Nicotiana tabacum HOM05D000421 ORTHO05D001007 2.3e-06 55.1 36 58.3
Potri.003G003100 Populus trichocarpa HOM05D000421 ORTHO05D001007 2.3e-06 55.1 37 62.2
Glyma.16G001100 Glycine max HOM05D000421 ORTHO05D001007 3.0e-06 54.7 40 60.0
CSS0007855 Camellia sinensis var. sinensis HOM05D000421 ORTHO05D012543 3.9e-06 54.3 36 61.1
Dinv06975 Davidia involucrata HOM05D000421 ORTHO05D001007 3.9e-06 54.3 32 62.5
Dinv29112 Davidia involucrata HOM05D000421 ORTHO05D001007 3.9e-06 54.3 33 60.6
THA.LOC104809032 Tarenaya hassleriana HOM05D000421 ORTHO05D001007 3.9e-06 54.3 30 73.3
vmacro19837 Vaccinium macrocarpon HOM05D000421 ORTHO05D001007 3.9e-06 54.3 30 73.3
CANSAT01G0797 Cannabis sativa HOM05D000421 ORTHO05D001007 5.1e-06 53.9 37 59.5
Haze_10007 Corylus avellana HOM05D000421 ORTHO05D001007 5.1e-06 53.9 36 61.1
Duzib248G1382 Durio zibethinus HOM05D000421 ORTHO05D001007 5.1e-06 53.9 30 70.0
Glyma.12G164800 Glycine max HOM05D000421 ORTHO05D001007 5.1e-06 53.9 40 57.5
MD15G1440900 Malus domestica HOM05D000421 ORTHO05D001007 5.1e-06 53.9 35 62.9
PGSC0003DMG400029169 Solanum tuberosum HOM05D000421 ORTHO05D001007 5.1e-06 53.9 36 55.6
FAN24G3305 Fragaria x ananassa HOM05D000421 ORTHO05D001007 6.6e-06 53.5 37 54.1
Gohir.A04G134300 Gossypium hirsutum HOM05D000421 ORTHO05D001007 6.6e-06 53.5 30 66.7
Gohir.D04G177500 Gossypium hirsutum HOM05D000421 ORTHO05D001007 6.6e-06 53.5 30 66.7
Gorai.012G170400 Gossypium raimondii HOM05D000421 ORTHO05D001007 6.6e-06 53.5 30 66.7
CiPaw.07G079400 Carya illinoinensis HOM05D000421 ORTHO05D001007 8.6e-06 53.1 36 50.0
AUR62033788 Chenopodium quinoa HOM05D000421 ORTHO05D001007 8.6e-06 53.1 37 56.8
Ciclev10015451m.g Citrus clementina HOM05D000421 ORTHO05D001007 8.6e-06 53.1 32 56.2
Potri.004G227700 Populus trichocarpa HOM05D000421 ORTHO05D001007 8.6e-06 53.1 54 48.1
Sabra19G0062500 Salix brachista HOM05D000421 ORTHO05D001007 8.6e-06 53.1 37 48.6
THA.LOC104809554 Tarenaya hassleriana HOM05D000421 ORTHO05D001007 8.6e-06 53.1 31 61.3
Thecc.06G195400 Theobroma cacao HOM05D000421 ORTHO05D001007 8.6e-06 53.1 39 51.3
TAR365G0705 Trochodendron aralioides HOM05D000421 ORTHO05D001007 8.6e-06 53.1 34 58.8
GSVIVG01001534001 Vitis vinifera HOM05D000421 ORTHO05D001007 8.6e-06 53.1 50 46.0


User provided reference genes

Program Settings