Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.0e-88 327.4 183 100.0
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-86 322.8 181 98.9
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-86 322.4 181 98.9
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.5e-86 320.9 181 98.3
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-85 319.7 181 97.8
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.2e-85 318.2 181 97.8
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.9e-75 283.9 181 90.1
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-74 283.5 197 85.3
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-74 283.5 201 83.6
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-74 283.5 197 85.3
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-71 273.5 201 81.1
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 2.4e-43 179.5 207 60.4
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.0e-43 178.7 194 59.3
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.9e-43 177.9 194 60.3
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.3e-38 163.7 202 55.9
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.5e-37 160.2 202 54.0
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.1e-35 154.1 205 53.2
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.6e-34 149.4 212 50.0
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.6e-34 149.4 212 50.0
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.1e-32 144.1 205 51.7
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 7.1e-32 141.4 198 49.5
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 2.7e-31 139.4 198 54.0
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 1.8e-30 136.7 201 49.3
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.6e-28 130.2 202 48.5
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 6.2e-28 128.3 202 47.5
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.8e-27 126.7 202 47.5
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.8e-27 126.7 202 47.5
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 2.4e-27 126.3 208 49.0
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 5.3e-27 125.2 205 46.3
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 9.9e-26 120.9 205 44.4
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 6.4e-25 118.2 198 46.0
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 8.4e-25 117.9 208 42.8
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 9.3e-24 114.4 202 43.6
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 9.3e-24 114.4 204 42.2
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 2.1e-23 113.2 204 42.6
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 6.0e-23 111.7 204 41.2
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 6.0e-23 111.7 191 45.5
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 7.9e-23 111.3 203 42.9
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.8e-22 110.2 209 41.6
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 3.9e-22 109.0 198 42.9
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 3.9e-22 109.0 195 44.6
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 6.7e-22 108.2 199 43.7
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 8.7e-22 107.8 198 42.4
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 4.3e-21 105.5 210 44.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.3e-21 105.5 198 42.4
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 2.1e-20 103.2 199 40.7
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 2.1e-20 103.2 208 42.3
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.8e-20 102.8 208 42.3
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.8e-20 102.8 196 41.8
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 6.2e-20 101.7 197 42.6
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 8.2e-20 101.3 197 40.6
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 8.2e-20 101.3 128 50.8
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 1.1e-19 100.9 206 42.2
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.1e-19 100.9 199 42.2
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.8e-19 100.1 210 40.5
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 3.1e-19 99.4 195 42.6
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 2.6e-18 96.3 194 39.7
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 3.4e-18 95.9 188 40.4
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.3e-17 94.0 196 41.8
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.3e-17 94.0 208 43.8
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 2.9e-17 92.8 197 42.1
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 2.9e-17 92.8 210 42.4
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 4.9e-17 92.0 211 40.3
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 4.9e-17 92.0 201 39.3
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 6.5e-17 91.7 196 40.8
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 8.4e-17 91.3 204 39.7
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 8.4e-17 91.3 196 41.3
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 1.4e-16 90.5 200 39.0
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 1.4e-16 90.5 203 40.9
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.9e-16 90.1 199 38.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.9e-16 90.1 199 38.2
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.9e-16 90.1 196 38.8
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 5.5e-16 88.6 204 39.7
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.2e-15 87.4 198 37.9
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 1.6e-15 87.0 209 40.2
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 4.6e-15 85.5 195 40.0
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 4.6e-15 85.5 196 37.8
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 6.0e-15 85.1 193 39.4
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 6.0e-15 85.1 166 40.4
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 7.9e-15 84.7 213 39.4
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 7.9e-15 84.7 212 40.1
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.0e-14 84.3 194 40.2
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.8e-14 83.6 202 37.6
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.8e-14 83.6 202 38.1
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.9e-14 82.4 214 35.5
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 3.9e-14 82.4 210 36.2
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 5.1e-14 82.0 215 35.3
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 8.7e-14 81.3 200 39.5
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.9e-13 80.1 196 38.8
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.9e-13 80.1 206 36.4
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 5.7e-13 78.6 132 44.7
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 1.3e-12 77.4 174 39.7
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.2e-12 76.6 202 35.6
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 2.8e-12 76.3 154 39.0
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 3.7e-12 75.9 192 38.0
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 6.3e-12 75.1 199 35.2
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 8.2e-12 74.7 217 34.6
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 8.2e-12 74.7 194 34.5
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 8.2e-12 74.7 198 35.9
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 5.3e-11 72.0 207 36.2
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 6.9e-11 71.6 204 36.3
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 6.9e-11 71.6 202 36.1
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 2.0e-10 70.1 201 35.3
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 4.5e-10 68.9 155 36.8
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 5.9e-10 68.6 196 37.8
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 7.7e-10 68.2 197 35.0
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 1.0e-09 67.8 192 36.5
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 1.0e-09 67.8 192 36.5
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.3e-09 67.4 194 38.7
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.3e-09 67.4 140 38.6
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.7e-09 67.0 192 35.9
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 1.7e-09 67.0 198 39.4
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 2.9e-09 66.2 196 37.8
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 2.9e-09 66.2 196 37.8
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.9e-09 66.2 200 36.5
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 2.9e-09 66.2 203 36.9
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 6.5e-09 65.1 196 38.8
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 6.5e-09 65.1 118 42.4
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 1.1e-08 64.3 135 38.5
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.4e-08 63.9 205 33.2
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.9e-08 63.5 199 34.7
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.9e-08 63.5 213 34.3
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 3.2e-08 62.8 197 38.6
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.2e-08 62.8 203 34.0
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 3.2e-08 62.8 115 40.0
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 3.2e-08 62.8 203 37.9
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 4.2e-08 62.4 197 34.5
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 5.5e-08 62.0 197 34.5
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.6e-07 60.5 197 37.6
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 3.6e-07 59.3 200 35.0
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.4e-06 57.4 197 31.0
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 5.1e-06 55.5 135 34.1
QL07p047840 Quercus lobata HOM05D004683 ORTHO05D005388 6.7e-06 55.1 63 46.0


User provided reference genes

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